RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 GAB3Q8WWW8 586 aa24.92■■□□□ 1.58
SHMT1-206ENST00000579558 TRIM62Q9BVG3 475 aa24.92■■□□□ 1.58
SHMT1-206ENST00000579558 GMEB2Q9UKD1 530 aa24.92■■□□□ 1.58
SHMT1-206ENST00000579558 GPR179Q6PRD1 2367 aa24.91■■□□□ 1.58
SHMT1-206ENST00000579558 SGK1O00141 431 aa24.91■■□□□ 1.58
SHMT1-206ENST00000579558 RPP40O75818 363 aaKnown RBP24.91■■□□□ 1.58
SHMT1-206ENST00000579558 FYNP06241 537 aa24.91■■□□□ 1.58
SHMT1-206ENST00000579558 CISD3P0C7P0 127 aa24.91■■□□□ 1.58
SHMT1-206ENST00000579558 TYRO3Q06418 890 aa24.91■■□□□ 1.58
SHMT1-206ENST00000579558 FKBP15Q5T1M5 1219 aa24.91■■□□□ 1.58
SHMT1-206ENST00000579558 LAIR1Q6GTX8 287 aa24.91■■□□□ 1.58
SHMT1-206ENST00000579558 TRMT11Q7Z4G4 463 aaKnown RBP24.91■■□□□ 1.58
SHMT1-206ENST00000579558 WDTC1Q8N5D0 677 aa24.91■■□□□ 1.58
SHMT1-206ENST00000579558 ANKRD20A12PQ8NF67 263 aa24.91■■□□□ 1.58
SHMT1-206ENST00000579558 KCNV2Q8TDN2 545 aa24.91■■□□□ 1.58
SHMT1-206ENST00000579558 DQX1Q8TE96 717 aaKnown RBP24.91■■□□□ 1.58
SHMT1-206ENST00000579558 LHX5Q9H2C1 402 aa24.91■■□□□ 1.58
SHMT1-206ENST00000579558 TJP2Q9UDY2 1190 aa24.91■■□□□ 1.58
SHMT1-206ENST00000579558 EBF1Q9UH73 591 aa24.91■■□□□ 1.58
SHMT1-206ENST00000579558 FBXO10Q9UK96 956 aa24.91■■□□□ 1.58
SHMT1-206ENST00000579558 NAALADL1Q9UQQ1 740 aa24.91■■□□□ 1.58
SHMT1-206ENST00000579558 EP300Q09472 2414 aaPredicted RBP24.91■■□□□ 1.58
SHMT1-206ENST00000579558 CAPN9O14815 690 aa24.9■■□□□ 1.58
SHMT1-206ENST00000579558 LATS1O95835 1130 aa24.9■■□□□ 1.58
SHMT1-206ENST00000579558 DGKEP52429 567 aa24.9■■□□□ 1.58
SHMT1-206ENST00000579558 TBX4P57082 545 aa24.9■■□□□ 1.58
SHMT1-206ENST00000579558 NUGGCQ68CJ6 796 aa24.9■■□□□ 1.58
SHMT1-206ENST00000579558 TMEM92Q6UXU6 159 aa24.9■■□□□ 1.58
SHMT1-206ENST00000579558 ARHGAP30Q7Z6I6 1101 aaPredicted RBP24.9■■□□□ 1.58
SHMT1-206ENST00000579558 C1orf131Q8NDD1 294 aaKnown RBP24.9■■□□□ 1.58
SHMT1-206ENST00000579558 DDI1Q8WTU0 396 aa24.9■■□□□ 1.58
SHMT1-206ENST00000579558 PPP1R13BQ96KQ4 1090 aa24.9■■□□□ 1.58
SHMT1-206ENST00000579558 NOX5Q96PH1 765 aa24.9■■□□□ 1.58
SHMT1-206ENST00000579558 CPXM1Q96SM3 734 aa24.9■■□□□ 1.58
SHMT1-206ENST00000579558 NAA15Q9BXJ9 866 aaKnown RBP24.9■■□□□ 1.58
SHMT1-206ENST00000579558 PLCB1Q9NQ66 1216 aa24.9■■□□□ 1.58
SHMT1-206ENST00000579558 STARD13Q9Y3M8 1113 aa24.9■■□□□ 1.58
SHMT1-206ENST00000579558 CEP83Q9Y592 693 aa24.9■■□□□ 1.58
SHMT1-206ENST00000579558 EML5Q05BV3 1969 aa24.9■■□□□ 1.58
SHMT1-206ENST00000579558 MYO18AQ92614 2054 aaKnown RBP24.89■■□□□ 1.58
SHMT1-206ENST00000579558 GVINP1Q7Z2Y8 2422 aa24.89■■□□□ 1.58
SHMT1-206ENST00000579558 PRRT4C9JH25 899 aa24.89■■□□□ 1.58
SHMT1-206ENST00000579558 ADAM23O75077 832 aa24.89■■□□□ 1.58
SHMT1-206ENST00000579558 IGLV3-27P01718 113 aa24.89■■□□□ 1.58
SHMT1-206ENST00000579558 HNRNPLP14866 589 aaKnown RBP eCLIP24.89■■□□□ 1.58
SHMT1-206ENST00000579558 COPB1P53618 953 aaKnown RBP24.89■■□□□ 1.58
SHMT1-206ENST00000579558 RING1Q06587 406 aa24.89■■□□□ 1.58
SHMT1-206ENST00000579558 MPPE1Q53F39 396 aa24.89■■□□□ 1.58
SHMT1-206ENST00000579558 ANO7Q6IWH7 933 aa24.89■■□□□ 1.58
SHMT1-206ENST00000579558 CAVIN1Q6NZI2 390 aaKnown RBP24.89■■□□□ 1.58
SHMT1-206ENST00000579558 BEND5Q7L4P6 421 aa24.89■■□□□ 1.58
SHMT1-206ENST00000579558 UNC45BQ8IWX7 931 aa24.89■■□□□ 1.58
SHMT1-206ENST00000579558 SERPINB11Q96P15 392 aa24.89■■□□□ 1.58
SHMT1-206ENST00000579558 POPDC2Q9HBU9 364 aa24.89■■□□□ 1.58
SHMT1-206ENST00000579558 POLMQ9NP87 494 aaPredicted RBP24.89■■□□□ 1.58
SHMT1-206ENST00000579558 STOML2Q9UJZ1 356 aa24.89■■□□□ 1.58
SHMT1-206ENST00000579558 TSPAN3O60637 253 aa24.88■■□□□ 1.57
SHMT1-206ENST00000579558 ALDH1A2O94788 518 aa24.88■■□□□ 1.57
SHMT1-206ENST00000579558 SLC11A2P49281 568 aa24.88■■□□□ 1.57
SHMT1-206ENST00000579558 KLK7P49862 253 aa24.88■■□□□ 1.57
SHMT1-206ENST00000579558 ZNF445P59923 1031 aa24.88■■□□□ 1.57
SHMT1-206ENST00000579558 ADGRF1Q5T601 910 aa24.88■■□□□ 1.57
SHMT1-206ENST00000579558 SYPL2Q5VXT5 272 aa24.88■■□□□ 1.57
SHMT1-206ENST00000579558 EGFLAMQ63HQ2 1017 aa24.88■■□□□ 1.57
SHMT1-206ENST00000579558 KIAA2013Q8IYS2 634 aa24.88■■□□□ 1.57
SHMT1-206ENST00000579558 STK33Q9BYT3 514 aa24.88■■□□□ 1.57
SHMT1-206ENST00000579558 GANQ9H2C0 597 aa24.88■■□□□ 1.57
SHMT1-206ENST00000579558 PDCL3Q9H2J4 239 aa24.88■■□□□ 1.57
SHMT1-206ENST00000579558 LIMA1Q9UHB6 759 aaKnown RBP24.88■■□□□ 1.57
SHMT1-206ENST00000579558 HCN2Q9UL51 889 aa24.88■■□□□ 1.57
SHMT1-206ENST00000579558 SLC27A6Q9Y2P4 619 aa24.88■■□□□ 1.57
SHMT1-206ENST00000579558 WDR87Q6ZQQ6 2873 aa24.88■■□□□ 1.57
SHMT1-206ENST00000579558 F8VZ95 297 aa24.87■■□□□ 1.57
SHMT1-206ENST00000579558 CYP11B1P15538 503 aa24.87■■□□□ 1.57
SHMT1-206ENST00000579558 CDK11BP21127 795 aaKnown RBP24.87■■□□□ 1.57
SHMT1-206ENST00000579558 YWHAZP63104 245 aaKnown RBP24.87■■□□□ 1.57
SHMT1-206ENST00000579558 NNTQ13423 1086 aa24.87■■□□□ 1.57
SHMT1-206ENST00000579558 NCAPHQ15003 741 aa24.87■■□□□ 1.57
SHMT1-206ENST00000579558 CACNA2D4Q7Z3S7 1137 aa24.87■■□□□ 1.57
SHMT1-206ENST00000579558 TAC4Q86UU9 113 aa24.87■■□□□ 1.57
SHMT1-206ENST00000579558 RASSF3Q86WH2 238 aa24.87■■□□□ 1.57
SHMT1-206ENST00000579558 FAM160A2Q8N612 972 aaPredicted RBP24.87■■□□□ 1.57
SHMT1-206ENST00000579558 AOPEPQ8N6M6 819 aa24.87■■□□□ 1.57
SHMT1-206ENST00000579558 MDGA1Q8NFP4 955 aa24.87■■□□□ 1.57
SHMT1-206ENST00000579558 ADAM32Q8TC27 787 aa24.87■■□□□ 1.57
SHMT1-206ENST00000579558 PIWIL1Q96J94 861 aaKnown RBP24.87■■□□□ 1.57
SHMT1-206ENST00000579558 TPSD1Q9BZJ3 242 aa24.87■■□□□ 1.57
SHMT1-206ENST00000579558 NAT10Q9H0A0 1025 aaKnown RBP24.87■■□□□ 1.57
SHMT1-206ENST00000579558 FAM207AQ9NSI2 230 aaPredicted RBP24.87■■□□□ 1.57
SHMT1-206ENST00000579558 TLR6Q9Y2C9 796 aa24.87■■□□□ 1.57
SHMT1-206ENST00000579558 RETP07949 1114 aa24.86■■□□□ 1.57
SHMT1-206ENST00000579558 NTSR1P30989 418 aa24.86■■□□□ 1.57
SHMT1-206ENST00000579558 WASP42768 502 aa24.86■■□□□ 1.57
SHMT1-206ENST00000579558 SNX16P57768 344 aa24.86■■□□□ 1.57
SHMT1-206ENST00000579558 ANO6Q4KMQ2 910 aa24.86■■□□□ 1.57
SHMT1-206ENST00000579558 OR6B2Q6IFH4 312 aa24.86■■□□□ 1.57
SHMT1-206ENST00000579558 CHPFQ8IZ52 775 aa24.86■■□□□ 1.57
SHMT1-206ENST00000579558 IPO4Q8TEX9 1081 aaKnown RBP24.86■■□□□ 1.57
SHMT1-206ENST00000579558 TMA16Q96EY4 203 aaKnown RBP24.86■■□□□ 1.57
SHMT1-206ENST00000579558 FCRL2Q96LA5 508 aaPredicted RBP24.86■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms