RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 I6L893 689 aaPredicted RBP16.77■□□□□ 0.28
SS18-211ENST00000578954 KCNK3O14649 394 aa16.77■□□□□ 0.28
SS18-211ENST00000578954 LINC01565O15544 149 aa16.77■□□□□ 0.28
SS18-211ENST00000578954 MSI1O43347 362 aaKnown RBP16.77■□□□□ 0.28
SS18-211ENST00000578954 SLC2A3P11169 496 aa16.77■□□□□ 0.28
SS18-211ENST00000578954 CCR1P32246 355 aa16.77■□□□□ 0.28
SS18-211ENST00000578954 PTPN7P35236 360 aa16.77■□□□□ 0.28
SS18-211ENST00000578954 ADRA1BP35368 520 aa16.77■□□□□ 0.28
SS18-211ENST00000578954 TBX4P57082 545 aa16.77■□□□□ 0.28
SS18-211ENST00000578954 CYP4F8P98187 520 aa16.77■□□□□ 0.28
SS18-211ENST00000578954 DPYSL2Q16555 572 aa16.77■□□□□ 0.28
SS18-211ENST00000578954 TAZQ16635 292 aa16.77■□□□□ 0.28
SS18-211ENST00000578954 SLC5A9Q2M3M2 681 aa16.77■□□□□ 0.28
SS18-211ENST00000578954 ATP13A4Q4VNC1 1196 aa16.77■□□□□ 0.28
SS18-211ENST00000578954 ERMARDQ5T6L9 678 aa16.77■□□□□ 0.28
SS18-211ENST00000578954 SCYL2Q6P3W7 929 aa16.77■□□□□ 0.28
SS18-211ENST00000578954 GPR149Q86SP6 731 aa16.77■□□□□ 0.28
SS18-211ENST00000578954 RASGEF1CQ8N431 466 aa16.77■□□□□ 0.28
SS18-211ENST00000578954 C12orf76Q8N812 135 aaPredicted RBP16.77■□□□□ 0.28
SS18-211ENST00000578954 RBM41Q96IZ5 413 aaKnown RBP16.77■□□□□ 0.28
SS18-211ENST00000578954 ATXN3LQ9H3M9 355 aa16.77■□□□□ 0.28
SS18-211ENST00000578954 IGFLR1Q9H665 355 aa16.77■□□□□ 0.28
SS18-211ENST00000578954 ZWILCHQ9H900 591 aa16.77■□□□□ 0.28
SS18-211ENST00000578954 ANLNQ9NQW6 1124 aa16.77■□□□□ 0.28
SS18-211ENST00000578954 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.77■□□□□ 0.28
SS18-211ENST00000578954 TTC7AQ9ULT0 858 aaPredicted RBP16.77■□□□□ 0.28
SS18-211ENST00000578954 SYNJ2BP-COX16A0A087WUM0 186 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 C3orf70A6NLC5 250 aaPredicted RBP16.76■□□□□ 0.27
SS18-211ENST00000578954 SPDYE4A6NLX3 237 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 ZNF197O14709 1029 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 KRT1P04264 644 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 DNA2P51530 1060 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 COPS2P61201 443 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 SLC7A9P82251 487 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 MTA1Q13330 715 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 PDK2Q15119 407 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 SMTNL2Q2TAL5 461 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 ARL13BQ3SXY8 428 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 KCNT1Q5JUK3 1230 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 DNTTIP2Q5QJE6 756 aaKnown RBP16.76■□□□□ 0.27
SS18-211ENST00000578954 TXNDC8Q6A555 127 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 GRASPQ7Z6J2 395 aaPredicted RBP16.76■□□□□ 0.27
SS18-211ENST00000578954 RCOR2Q8IZ40 523 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 COG1Q8WTW3 980 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 RAPGEF5Q92565 580 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 TCEAL4Q96EI5 215 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 ZFRQ96KR1 1074 aaKnown RBP16.76■□□□□ 0.27
SS18-211ENST00000578954 KLF16Q9BXK1 252 aaPredicted RBP16.76■□□□□ 0.27
SS18-211ENST00000578954 RNF38Q9H0F5 515 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 WDCPQ9H6R7 721 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 L2HGDHQ9H9P8 463 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 MTMR10Q9NXD2 777 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 COX16Q9P0S2 106 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 CLEC1BQ9P126 229 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 RNF14Q9UBS8 474 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 CDC23Q9UJX2 597 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 AP4E1Q9UPM8 1137 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 MRFAP1Q9Y605 127 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 CDH23Q9H251 3354 aa16.76■□□□□ 0.27
SS18-211ENST00000578954 C2orf16Q68DN1 1984 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 SLC12A8A0AV02 714 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 URI1O94763 535 aaPredicted RBP16.75■□□□□ 0.27
SS18-211ENST00000578954 ZRANB2O95218 330 aaKnown RBP eCLIP16.75■□□□□ 0.27
SS18-211ENST00000578954 PYGMP11217 842 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 KDELR1P24390 212 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 GJC1P36383 396 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 ZNF135P52742 658 aaPredicted RBP16.75■□□□□ 0.27
SS18-211ENST00000578954 NTHL1P78549 312 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 COG7P83436 770 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 SEMA3BQ13214 749 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 PPP2R5EQ16537 467 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 CA9Q16790 459 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 ZC3H12AQ5D1E8 599 aaKnown RBP16.75■□□□□ 0.27
SS18-211ENST00000578954 EFHC2Q5JST6 749 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 RARS2Q5T160 578 aaKnown RBP16.75■□□□□ 0.27
SS18-211ENST00000578954 NUGGCQ68CJ6 796 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 TMC5Q6UXY8 1006 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 MIB1Q86YT6 1006 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 CREG2Q8IUH2 290 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 TSC1Q92574 1164 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 PLD4Q96BZ4 506 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 SLC22A12Q96S37 553 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 HAPLN3Q96S86 360 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 PSMB7Q99436 277 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 TKTL2Q9H0I9 626 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 OSBPL2Q9H1P3 480 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 TASP1Q9H6P5 420 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 PIDD1Q9HB75 910 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 PCDH18Q9HCL0 1135 aa16.75■□□□□ 0.27
SS18-211ENST00000578954 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.75■□□□□ 0.27
SS18-211ENST00000578954 RCOR3Q9P2K3 495 aaPredicted RBP16.75■□□□□ 0.27
SS18-211ENST00000578954 TRAV19A0A0A6YYK7 116 aa16.74■□□□□ 0.27
SS18-211ENST00000578954 SRGAP2O75044 1071 aa16.74■□□□□ 0.27
SS18-211ENST00000578954 TBX10O75333 385 aa16.74■□□□□ 0.27
SS18-211ENST00000578954 GJA1P17302 382 aa16.74■□□□□ 0.27
SS18-211ENST00000578954 HDCP19113 662 aa16.74■□□□□ 0.27
SS18-211ENST00000578954 WEE1P30291 646 aa16.74■□□□□ 0.27
SS18-211ENST00000578954 L1CAMP32004 1257 aa16.74■□□□□ 0.27
SS18-211ENST00000578954 CXCR5P32302 372 aa16.74■□□□□ 0.27
SS18-211ENST00000578954 NRG1Q02297 640 aaPredicted RBP16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms