RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 DHX40Q8IX18 779 aaKnown RBP11.67□□□□□ -0.54
VPS53-207ENST00000570510 ZSWIM2Q8NEG5 633 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 OR2T3Q8NH03 318 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 CXorf38Q8TB03 319 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 KCNE4Q8WWG9 221 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 RAD54LQ92698 747 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 ZNF578Q96N58 590 aaPredicted RBP11.67□□□□□ -0.54
VPS53-207ENST00000570510 FIZ1Q96SL8 496 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 KLF16Q9BXK1 252 aaPredicted RBP11.67□□□□□ -0.54
VPS53-207ENST00000570510 B3GNT5Q9BYG0 378 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 SEMA4CQ9C0C4 833 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 DMAP1Q9NPF5 467 aaPredicted RBP11.67□□□□□ -0.54
VPS53-207ENST00000570510 GDF3Q9NR23 364 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 AASDHPPTQ9NRN7 309 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 COMMD8Q9NX08 183 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 ELOVL2Q9NXB9 296 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 TBC1D7Q9P0N9 293 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 IL17BQ9UHF5 180 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 PLA2G4CQ9UP65 541 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 NCKAP1Q9Y2A7 1128 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 SLC27A6Q9Y2P4 619 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 PCDHB13Q9Y5F0 798 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 SLCO1B1Q9Y6L6 691 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 MORC2Q9Y6X9 1032 aaPredicted RBP11.67□□□□□ -0.54
VPS53-207ENST00000570510 KNL1Q8NG31 2342 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 H3BQV1 296 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 VILLO15195 856 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 KLK10O43240 276 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 PAPSS1O43252 624 aaPredicted RBP11.66□□□□□ -0.54
VPS53-207ENST00000570510 TIMM44O43615 452 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 TACC1O75410 805 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 ACO1P21399 889 aaKnown RBP11.66□□□□□ -0.54
VPS53-207ENST00000570510 GJB2P29033 226 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 PLA2G4AP47712 749 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 MFAP3P55082 362 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 SRSF1Q07955 248 aaKnown RBP eCLIP11.66□□□□□ -0.54
VPS53-207ENST00000570510 VAC14Q08AM6 782 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 EIF4HQ15056 248 aaKnown RBP11.66□□□□□ -0.54
VPS53-207ENST00000570510 GEN1Q17RS7 908 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 FNDC3BQ53EP0 1204 aaKnown RBP11.66□□□□□ -0.54
VPS53-207ENST00000570510 HS1BP3Q53T59 392 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 KCNT1Q5JUK3 1230 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 C10orf120Q5SQS8 335 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 L1TD1Q5T7N2 865 aaKnown RBP11.66□□□□□ -0.54
VPS53-207ENST00000570510 LIMS2Q7Z4I7 341 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 LSMEM2Q8N112 164 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 GPD1LQ8N335 351 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 LARP4BQ92615 738 aaKnown RBP11.66□□□□□ -0.54
VPS53-207ENST00000570510 SMARCD1Q96GM5 515 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 TNIP3Q96KP6 325 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 DPEP3Q9H4B8 488 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 SGK2Q9HBY8 427 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 TMEM30AQ9NV96 361 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 SEL1LQ9UBV2 794 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 ADAMTS1Q9UHI8 967 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 ZNF510Q9Y2H8 683 aa11.66□□□□□ -0.54
VPS53-207ENST00000570510 COL6A6A6NMZ7 2263 aa11.65□□□□□ -0.54
VPS53-207ENST00000570510 ZNF233A6NK53 670 aa11.65□□□□□ -0.54
VPS53-207ENST00000570510 K7ELQ4 463 aaPredicted RBP11.65□□□□□ -0.54
VPS53-207ENST00000570510 TSPAN3O60637 253 aa11.65□□□□□ -0.54
VPS53-207ENST00000570510 AP1G2O75843 785 aa11.65□□□□□ -0.54
VPS53-207ENST00000570510 FAM163BP0C2L3 166 aa11.65□□□□□ -0.54
VPS53-207ENST00000570510 CKMT2P17540 419 aa11.65□□□□□ -0.54
VPS53-207ENST00000570510 TNNI1P19237 187 aa11.65□□□□□ -0.54
VPS53-207ENST00000570510 PRKCHP24723 683 aa11.65□□□□□ -0.54
VPS53-207ENST00000570510 E2F1Q01094 437 aa11.65□□□□□ -0.54
VPS53-207ENST00000570510 KCNA1Q09470 495 aa11.65□□□□□ -0.54
VPS53-207ENST00000570510 TRPC3Q13507 836 aa11.65□□□□□ -0.54
VPS53-207ENST00000570510 SLC45A4Q5BKX6 768 aa11.65□□□□□ -0.54
VPS53-207ENST00000570510 C6orf132Q5T0Z8 1188 aa11.65□□□□□ -0.54
VPS53-207ENST00000570510 TADA2BQ86TJ2 420 aa11.65□□□□□ -0.54
VPS53-207ENST00000570510 OR5B17Q8NGF7 314 aa11.65□□□□□ -0.54
VPS53-207ENST00000570510 CBWD1Q9BRT8 395 aa11.65□□□□□ -0.54
VPS53-207ENST00000570510 TRIM4Q9C037 500 aa11.65□□□□□ -0.54
VPS53-207ENST00000570510 WDR70Q9NW82 654 aa11.65□□□□□ -0.54
VPS53-207ENST00000570510 FBXO10Q9UK96 956 aa11.65□□□□□ -0.54
VPS53-207ENST00000570510 MGAQ8IWI9 3026 aa11.64□□□□□ -0.55
VPS53-207ENST00000570510 KIAA0391O15091 583 aaKnown RBP11.64□□□□□ -0.55
VPS53-207ENST00000570510 CD2BP2O95400 341 aaKnown RBP11.64□□□□□ -0.55
VPS53-207ENST00000570510 ZDHHC11BP0C7U3 371 aa11.64□□□□□ -0.55
VPS53-207ENST00000570510 DLATP10515 647 aaKnown RBP11.64□□□□□ -0.55
VPS53-207ENST00000570510 GAP43P17677 238 aa11.64□□□□□ -0.55
VPS53-207ENST00000570510 TRIM21P19474 475 aaKnown RBP11.64□□□□□ -0.55
VPS53-207ENST00000570510 CD38P28907 300 aa11.64□□□□□ -0.55
VPS53-207ENST00000570510 ZBTB16Q05516 673 aa11.64□□□□□ -0.55
VPS53-207ENST00000570510 SFSWAPQ12872 951 aaKnown RBP11.64□□□□□ -0.55
VPS53-207ENST00000570510 NFATC3Q12968 1075 aa11.64□□□□□ -0.55
VPS53-207ENST00000570510 ENPP2Q13822 863 aa11.64□□□□□ -0.55
VPS53-207ENST00000570510 TRAPPC11Q7Z392 1133 aa11.64□□□□□ -0.55
VPS53-207ENST00000570510 FAM35AQ86V20 835 aa11.64□□□□□ -0.55
VPS53-207ENST00000570510 SAP25Q8TEE9 199 aa11.64□□□□□ -0.55
VPS53-207ENST00000570510 DDI1Q8WTU0 396 aa11.64□□□□□ -0.55
VPS53-207ENST00000570510 SORCS1Q8WY21 1168 aa11.64□□□□□ -0.55
VPS53-207ENST00000570510 DPH1Q9BZG8 443 aa11.64□□□□□ -0.55
VPS53-207ENST00000570510 ZSCAN16Q9H4T2 348 aaPredicted RBP11.64□□□□□ -0.55
VPS53-207ENST00000570510 FBRSQ9HAH7 460 aa11.64□□□□□ -0.55
VPS53-207ENST00000570510 KRT82Q9NSB4 513 aa11.64□□□□□ -0.55
VPS53-207ENST00000570510 BLOC1S4Q9NUP1 217 aa11.64□□□□□ -0.55
VPS53-207ENST00000570510 ATMQ13315 3056 aa11.64□□□□□ -0.55
VPS53-207ENST00000570510 GREM1O60565 184 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms