RNA–Protein interactions for RNA: ENST00000569827.5

CAPN3-220, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 908 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-220ENST00000569827 ADAMTS14Q8WXS8 1223 aa12.68□□□□□ -0.38
CAPN3-220ENST00000569827 INTS4Q96HW7 963 aaKnown RBP12.68□□□□□ -0.38
CAPN3-220ENST00000569827 HNRNPABQ99729 332 aaKnown RBP12.68□□□□□ -0.38
CAPN3-220ENST00000569827 CIPCQ9C0C6 399 aa12.68□□□□□ -0.38
CAPN3-220ENST00000569827 FAM124BQ9H5Z6 455 aaPredicted RBP12.68□□□□□ -0.38
CAPN3-220ENST00000569827 GAREM1Q9H706 876 aa12.68□□□□□ -0.38
CAPN3-220ENST00000569827 USP36Q9P275 1121 aaKnown RBP12.68□□□□□ -0.38
CAPN3-220ENST00000569827 CGNQ9P2M7 1197 aaKnown RBP12.68□□□□□ -0.38
CAPN3-220ENST00000569827 BTBD3Q9Y2F9 522 aa12.68□□□□□ -0.38
CAPN3-220ENST00000569827 GPSM3Q9Y4H4 160 aa12.68□□□□□ -0.38
CAPN3-220ENST00000569827 A0A1B0GTW7 788 aa12.67□□□□□ -0.38
CAPN3-220ENST00000569827 PVALEFA0A1B0GWK0 134 aa12.67□□□□□ -0.38
CAPN3-220ENST00000569827 KCNK3O14649 394 aa12.67□□□□□ -0.38
CAPN3-220ENST00000569827 ACTN4O43707 911 aaKnown RBP12.67□□□□□ -0.38
CAPN3-220ENST00000569827 TSPAN3O60637 253 aa12.67□□□□□ -0.38
CAPN3-220ENST00000569827 CILPO75339 1184 aa12.67□□□□□ -0.38
CAPN3-220ENST00000569827 PRR29P0C7W0 189 aa12.67□□□□□ -0.38
CAPN3-220ENST00000569827 RDXP35241 583 aaKnown RBP12.67□□□□□ -0.38
CAPN3-220ENST00000569827 COPAP53621 1224 aa12.67□□□□□ -0.38
CAPN3-220ENST00000569827 PPP3CAQ08209 521 aa12.67□□□□□ -0.38
CAPN3-220ENST00000569827 PKP1Q13835 747 aa12.67□□□□□ -0.38
CAPN3-220ENST00000569827 TMEM215Q68D42 235 aa12.67□□□□□ -0.38
CAPN3-220ENST00000569827 UNC93AQ86WB7 457 aa12.67□□□□□ -0.38
CAPN3-220ENST00000569827 CYB5D2Q8WUJ1 264 aa12.67□□□□□ -0.38
CAPN3-220ENST00000569827 FOXJ1Q92949 421 aa12.67□□□□□ -0.38
CAPN3-220ENST00000569827 SIPA1Q96FS4 1042 aa12.67□□□□□ -0.38
CAPN3-220ENST00000569827 PAGE5Q96GU1 130 aa12.67□□□□□ -0.38
CAPN3-220ENST00000569827 NT5C1AQ9BXI3 368 aa12.67□□□□□ -0.38
CAPN3-220ENST00000569827 MAGEF1Q9HAY2 307 aa12.67□□□□□ -0.38
CAPN3-220ENST00000569827 FAM13BQ9NYF5 915 aa12.67□□□□□ -0.38
CAPN3-220ENST00000569827 THAP10Q9P2Z0 257 aaPredicted RBP12.67□□□□□ -0.38
CAPN3-220ENST00000569827 SUSD2Q9UGT4 822 aa12.67□□□□□ -0.38
CAPN3-220ENST00000569827 FBXO10Q9UK96 956 aa12.67□□□□□ -0.38
CAPN3-220ENST00000569827 PCOLCE2Q9UKZ9 415 aa12.67□□□□□ -0.38
CAPN3-220ENST00000569827 MAPK8IP1Q9UQF2 711 aa12.67□□□□□ -0.38
CAPN3-220ENST00000569827 RAXQ9Y2V3 346 aa12.67□□□□□ -0.38
CAPN3-220ENST00000569827 PCDHA5Q9Y5H7 936 aa12.67□□□□□ -0.38
CAPN3-220ENST00000569827 ARID1BQ8NFD5 2236 aaPredicted RBP12.67□□□□□ -0.38
CAPN3-220ENST00000569827 A0A1B0GVT2 93 aa12.66□□□□□ -0.38
CAPN3-220ENST00000569827 FAM149AA5PLN7 773 aa12.66□□□□□ -0.38
CAPN3-220ENST00000569827 FAM221BA6H8Z2 402 aa12.66□□□□□ -0.38
CAPN3-220ENST00000569827 TULP2O00295 520 aa12.66□□□□□ -0.38
CAPN3-220ENST00000569827 GFRA2O00451 464 aa12.66□□□□□ -0.38
CAPN3-220ENST00000569827 BCAT2O15382 392 aaPredicted RBP12.66□□□□□ -0.38
CAPN3-220ENST00000569827 CBFA2T3O75081 653 aa12.66□□□□□ -0.38
CAPN3-220ENST00000569827 PENKP01210 267 aaPredicted RBP12.66□□□□□ -0.38
CAPN3-220ENST00000569827 EPHX1P07099 455 aa12.66□□□□□ -0.38
CAPN3-220ENST00000569827 ATXN1LP0C7T5 689 aaKnown RBP12.66□□□□□ -0.38
CAPN3-220ENST00000569827 RALAP11233 206 aa12.66□□□□□ -0.38
CAPN3-220ENST00000569827 CSNK1EP49674 416 aaKnown RBP12.66□□□□□ -0.38
CAPN3-220ENST00000569827 IL9RQ01113 521 aa12.66□□□□□ -0.38
CAPN3-220ENST00000569827 INCA1Q0VD86 236 aa12.66□□□□□ -0.38
CAPN3-220ENST00000569827 HLA-BQ31612 363 aa12.66□□□□□ -0.38
CAPN3-220ENST00000569827 CCNI2Q6ZMN8 369 aaPredicted RBP12.66□□□□□ -0.38
CAPN3-220ENST00000569827 CCDC186Q7Z3E2 898 aa12.66□□□□□ -0.38
CAPN3-220ENST00000569827 ANKS1BQ7Z6G8 1248 aa12.66□□□□□ -0.38
CAPN3-220ENST00000569827 PDZD3Q86UT5 571 aa12.66□□□□□ -0.38
CAPN3-220ENST00000569827 CEP57L1Q8IYX8 460 aa12.66□□□□□ -0.38
CAPN3-220ENST00000569827 GOLGA5Q8TBA6 731 aa12.66□□□□□ -0.38
CAPN3-220ENST00000569827 TMC2Q8TDI7 906 aa12.66□□□□□ -0.38
CAPN3-220ENST00000569827 HNRNPLLQ8WVV9 542 aaKnown RBP12.66□□□□□ -0.38
CAPN3-220ENST00000569827 DNASE2BQ8WZ79 361 aa12.66□□□□□ -0.38
CAPN3-220ENST00000569827 CRELD1Q96HD1 420 aa12.66□□□□□ -0.38
CAPN3-220ENST00000569827 PIWIL1Q96J94 861 aaKnown RBP12.66□□□□□ -0.38
CAPN3-220ENST00000569827 ARID3AQ99856 593 aa12.66□□□□□ -0.38
CAPN3-220ENST00000569827 BACH2Q9BYV9 841 aa12.66□□□□□ -0.38
CAPN3-220ENST00000569827 C6orf106Q9H6K1 298 aaPredicted RBP12.66□□□□□ -0.38
CAPN3-220ENST00000569827 ITM2CQ9NQX7 267 aa12.66□□□□□ -0.38
CAPN3-220ENST00000569827 TM7SF3Q9NS93 570 aa12.66□□□□□ -0.38
CAPN3-220ENST00000569827 AGO1Q9UL18 857 aaKnown RBP12.66□□□□□ -0.38
CAPN3-220ENST00000569827 A0A1B0GVL5 298 aa12.65□□□□□ -0.38
CAPN3-220ENST00000569827 SLC12A8A0AV02 714 aa12.65□□□□□ -0.38
CAPN3-220ENST00000569827 SYNCRIPO60506 623 aaKnown RBP12.65□□□□□ -0.38
CAPN3-220ENST00000569827 F13A1P00488 732 aa12.65□□□□□ -0.38
CAPN3-220ENST00000569827 RPN1P04843 607 aaKnown RBP12.65□□□□□ -0.38
CAPN3-220ENST00000569827 PDIA4P13667 645 aaKnown RBP12.65□□□□□ -0.38
CAPN3-220ENST00000569827 MATKP42679 507 aa12.65□□□□□ -0.38
CAPN3-220ENST00000569827 VAMP7P51809 220 aa12.65□□□□□ -0.38
CAPN3-220ENST00000569827 DNM1Q05193 864 aaKnown RBP12.65□□□□□ -0.38
CAPN3-220ENST00000569827 SLC14A1Q13336 389 aa12.65□□□□□ -0.38
CAPN3-220ENST00000569827 SOWAHCQ53LP3 525 aaPredicted RBP12.65□□□□□ -0.38
CAPN3-220ENST00000569827 KLHDC10Q6PID8 442 aa12.65□□□□□ -0.38
CAPN3-220ENST00000569827 SERPINA13PQ6UXR4 307 aa12.65□□□□□ -0.38
CAPN3-220ENST00000569827 SLC9A9Q8IVB4 645 aa12.65□□□□□ -0.38
CAPN3-220ENST00000569827 DDI1Q8WTU0 396 aa12.65□□□□□ -0.38
CAPN3-220ENST00000569827 PRCCQ92733 491 aaPredicted RBP12.65□□□□□ -0.38
CAPN3-220ENST00000569827 TAF4BQ92750 862 aa12.65□□□□□ -0.38
CAPN3-220ENST00000569827 SEMA4DQ92854 862 aa12.65□□□□□ -0.38
CAPN3-220ENST00000569827 EEF2KMTQ96G04 330 aa12.65□□□□□ -0.38
CAPN3-220ENST00000569827 HEXIM2Q96MH2 286 aaKnown RBP12.65□□□□□ -0.38
CAPN3-220ENST00000569827 DUSP16Q9BY84 665 aa12.65□□□□□ -0.38
CAPN3-220ENST00000569827 NIF3L1Q9GZT8 377 aa12.65□□□□□ -0.38
CAPN3-220ENST00000569827 MTG2Q9H4K7 406 aa12.65□□□□□ -0.38
CAPN3-220ENST00000569827 CCDC86Q9H6F5 360 aaKnown RBP12.65□□□□□ -0.38
CAPN3-220ENST00000569827 ELOVL2Q9NXB9 296 aa12.65□□□□□ -0.38
CAPN3-220ENST00000569827 TOR4AQ9NXH8 423 aa12.65□□□□□ -0.38
CAPN3-220ENST00000569827 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.65□□□□□ -0.38
CAPN3-220ENST00000569827 SLC27A6Q9Y2P4 619 aa12.65□□□□□ -0.38
CAPN3-220ENST00000569827 PTPRQQ9UMZ3 2332 aa12.64□□□□□ -0.39
CAPN3-220ENST00000569827 METTL12A8MUP2 240 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms