RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 SETSIPP0DME0 302 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 TROVE2P10155 538 aaKnown RBP eCLIP9.06□□□□□ -0.96
LINC00558-201ENST00000569422 SULT1E1P49888 294 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 POU5F1BQ06416 359 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 PDK2Q15119 407 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 HEATR6Q6AI08 1181 aaKnown RBP9.06□□□□□ -0.96
LINC00558-201ENST00000569422 TWF2Q6IBS0 349 aaKnown RBP9.06□□□□□ -0.96
LINC00558-201ENST00000569422 USP50Q70EL3 339 aaPredicted RBP9.06□□□□□ -0.96
LINC00558-201ENST00000569422 TMEM110Q86TL2 294 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 RNF169Q8NCN4 708 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 SHCBP1Q8NEM2 672 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 APPL2Q8NEU8 664 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 ATXN7L3BQ96GX2 97 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 PRR11Q96HE9 360 aaPredicted RBP9.06□□□□□ -0.96
LINC00558-201ENST00000569422 KCTD15Q96SI1 283 aaPredicted RBP9.06□□□□□ -0.96
LINC00558-201ENST00000569422 TSSK1BQ9BXA7 367 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 SLC4A5Q9BY07 1137 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 FRMD8P1Q9BZ68 369 aaPredicted RBP9.06□□□□□ -0.96
LINC00558-201ENST00000569422 SMYD2Q9NRG4 433 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 HEY2Q9UBP5 337 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 KIAA1257Q9ULG3 409 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 NUMBLQ9Y6R0 609 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 MEIS3P2A8K0S8 358 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 TPPPO94811 219 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 ENDOD1O94919 500 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 CYP2B6P20813 491 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 EPHB2P29323 1055 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 TKTP29401 623 aaKnown RBP9.06□□□□□ -0.96
LINC00558-201ENST00000569422 L1CAMP32004 1257 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 PAN2Q504Q3 1202 aaKnown RBP9.06□□□□□ -0.96
LINC00558-201ENST00000569422 ZCCHC23Q6ZST2 131 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 SRPK1Q96SB4 655 aaKnown RBP9.06□□□□□ -0.96
LINC00558-201ENST00000569422 KATNBL1Q9H079 304 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 ADAMTS10Q9H324 1103 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 HUS1O60921 280 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 GPR32O75388 356 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 CTSHP09668 335 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 CSH1P0DML2 217 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 CSH2P0DML3 217 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 CDC25CP30307 473 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 GMPRP36959 345 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 CPA2P48052 419 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 BST2Q10589 180 aaKnown RBP9.05□□□□□ -0.96
LINC00558-201ENST00000569422 CCL14Q16627 93 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 DCAF4L1Q3SXM0 396 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 UNC5AQ6ZN44 842 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 RFX8Q6ZV50 586 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 PIGZQ86VD9 579 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 ZNF410Q86VK4 478 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 MYO1HQ8N1T3 1032 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 PDCD7Q8N8D1 485 aaKnown RBP9.05□□□□□ -0.96
LINC00558-201ENST00000569422 GIMAP7Q8NHV1 300 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 MZB1Q8WU39 189 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 C10orf82Q8WW14 230 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 SLC44A1Q8WWI5 657 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 CSPG4P5Q96PW8 444 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 ABHD16BQ9H3Z7 469 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 ARMCX1Q9P291 453 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 FAM237BA0A1B0GVD1 139 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 CCDC78A2IDD5 438 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 WDR27A2RRH5 827 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 KCNK1O00180 336 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 CAPN9O14815 690 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 CHADO15335 359 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 USP12O75317 370 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 SERPINB3P29508 390 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 MAP2K2P36507 400 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 ARL4AP40617 200 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 AFF1P51825 1210 aaKnown RBP9.05□□□□□ -0.96
LINC00558-201ENST00000569422 GTF2A2P52657 109 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 ARFIP2P53365 341 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 MAP3K7CLP57077 242 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 TMPRSS15P98073 1019 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 IFRD2Q12894 506 aaPredicted RBP9.05□□□□□ -0.96
LINC00558-201ENST00000569422 PPP2R5DQ14738 602 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 KYAT1Q16773 422 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 PKDCCQ504Y2 493 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 LDLRAD1Q5T700 205 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 C16orf46Q6P387 395 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 PLEKHH3Q7Z736 793 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 LONP2Q86WA8 852 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 SLC26A11Q86WA9 606 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 ADGRF2Q8IZF7 708 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 ARRDC4Q8NCT1 418 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 DEPDC1BQ8WUY9 529 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 KBTBD7Q8WVZ9 684 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 MS4A4AQ96JQ5 239 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 TRIM55Q9BYV6 548 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 POPDC2Q9HBU9 364 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 ARHGEF3Q9NR81 526 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 TXLNGQ9NUQ3 528 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 SLC5A4Q9NY91 659 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.05□□□□□ -0.96
LINC00558-201ENST00000569422 DTLQ9NZJ0 730 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 RABL2AQ9UBK7 228 aaPredicted RBP9.05□□□□□ -0.96
LINC00558-201ENST00000569422 TTLL3Q9Y4R7 772 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 WDR90Q96KV7 1748 aa9.05□□□□□ -0.96
LINC00558-201ENST00000569422 BRCA1P38398 1863 aaKnown RBP9.04□□□□□ -0.96
LINC00558-201ENST00000569422 SLC15A5A6NIM6 579 aa9.04□□□□□ -0.96
LINC00558-201ENST00000569422 M0QYT0 321 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms