RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 GCNT1Q02742 428 aa14.58□□□□□ -0.08
CLN3-235ENST00000568497 UBXN1Q04323 297 aa14.58□□□□□ -0.08
CLN3-235ENST00000568497 ADIGQ0VDE8 80 aa14.58□□□□□ -0.08
CLN3-235ENST00000568497 CT47A1Q5JQC4 288 aaPredicted RBP14.58□□□□□ -0.08
CLN3-235ENST00000568497 ANO7Q6IWH7 933 aa14.58□□□□□ -0.08
CLN3-235ENST00000568497 PMF1Q6P1K2 205 aa14.58□□□□□ -0.08
CLN3-235ENST00000568497 ANKRD52Q8NB46 1076 aa14.58□□□□□ -0.08
CLN3-235ENST00000568497 MDM1Q8TC05 714 aa14.58□□□□□ -0.08
CLN3-235ENST00000568497 SH3RF2Q8TEC5 729 aa14.58□□□□□ -0.08
CLN3-235ENST00000568497 EXOC4Q96A65 974 aa14.58□□□□□ -0.08
CLN3-235ENST00000568497 CHFRQ96EP1 664 aa14.58□□□□□ -0.08
CLN3-235ENST00000568497 P2RY13Q9BPV8 354 aa14.58□□□□□ -0.08
CLN3-235ENST00000568497 FAM83CQ9BQN1 747 aa14.58□□□□□ -0.08
CLN3-235ENST00000568497 MIS12Q9H081 205 aa14.58□□□□□ -0.08
CLN3-235ENST00000568497 LINC00597Q9H2U6 94 aa14.58□□□□□ -0.08
CLN3-235ENST00000568497 HPS4Q9NQG7 708 aa14.58□□□□□ -0.08
CLN3-235ENST00000568497 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.58□□□□□ -0.08
CLN3-235ENST00000568497 SIK3Q9Y2K2 1263 aa14.58□□□□□ -0.08
CLN3-235ENST00000568497 CPQQ9Y646 472 aa14.58□□□□□ -0.08
CLN3-235ENST00000568497 ATXN2Q99700 1313 aaKnown RBP14.58□□□□□ -0.08
CLN3-235ENST00000568497 TRAV19A0A0A6YYK7 116 aa14.57□□□□□ -0.08
CLN3-235ENST00000568497 LGALS16A8MUM7 142 aa14.57□□□□□ -0.08
CLN3-235ENST00000568497 UPK3BL1B0FP48 263 aa14.57□□□□□ -0.08
CLN3-235ENST00000568497 UPK3BL2E5RIL1 263 aa14.57□□□□□ -0.08
CLN3-235ENST00000568497 HMBSP08397 361 aa14.57□□□□□ -0.08
CLN3-235ENST00000568497 MBL2P11226 248 aaPredicted RBP14.57□□□□□ -0.08
CLN3-235ENST00000568497 GNA15P30679 374 aa14.57□□□□□ -0.08
CLN3-235ENST00000568497 CLCN1P35523 988 aa14.57□□□□□ -0.08
CLN3-235ENST00000568497 AVPR1AP37288 418 aa14.57□□□□□ -0.08
CLN3-235ENST00000568497 GALK1P51570 392 aa14.57□□□□□ -0.08
CLN3-235ENST00000568497 TKTL1P51854 596 aa14.57□□□□□ -0.08
CLN3-235ENST00000568497 KIF11P52732 1056 aa14.57□□□□□ -0.08
CLN3-235ENST00000568497 MFAP3P55082 362 aa14.57□□□□□ -0.08
CLN3-235ENST00000568497 FAM193AP78312 1265 aa14.57□□□□□ -0.08
CLN3-235ENST00000568497 SEMA3BQ13214 749 aa14.57□□□□□ -0.08
CLN3-235ENST00000568497 PKDCCQ504Y2 493 aa14.57□□□□□ -0.08
CLN3-235ENST00000568497 BHLHA9Q7RTU4 235 aa14.57□□□□□ -0.08
CLN3-235ENST00000568497 RAB44Q7Z6P3 723 aaPredicted RBP14.57□□□□□ -0.08
CLN3-235ENST00000568497 PIP4P1Q86T03 277 aa14.57□□□□□ -0.08
CLN3-235ENST00000568497 SLC20A1Q8WUM9 679 aa14.57□□□□□ -0.08
CLN3-235ENST00000568497 SHC3Q92529 594 aa14.57□□□□□ -0.08
CLN3-235ENST00000568497 FBRSL1Q9HCM7 1045 aaKnown RBP14.57□□□□□ -0.08
CLN3-235ENST00000568497 IL37Q9NZH6 218 aa14.57□□□□□ -0.08
CLN3-235ENST00000568497 UXTQ9UBK9 157 aaPredicted RBP14.57□□□□□ -0.08
CLN3-235ENST00000568497 GTPBP10A4D1E9 387 aaKnown RBP14.56□□□□□ -0.08
CLN3-235ENST00000568497 LEFTY2O00292 366 aa14.56□□□□□ -0.08
CLN3-235ENST00000568497 MAP3K13O43283 966 aa14.56□□□□□ -0.08
CLN3-235ENST00000568497 GFPT2O94808 682 aa14.56□□□□□ -0.08
CLN3-235ENST00000568497 RTN3O95197 1032 aaPredicted RBP14.56□□□□□ -0.08
CLN3-235ENST00000568497 PAEPP09466 180 aa14.56□□□□□ -0.08
CLN3-235ENST00000568497 C2CD6Q53TS8 623 aa14.56□□□□□ -0.08
CLN3-235ENST00000568497 CC2D1AQ6P1N0 951 aaPredicted RBP14.56□□□□□ -0.08
CLN3-235ENST00000568497 LCLAT1Q6UWP7 414 aa14.56□□□□□ -0.08
CLN3-235ENST00000568497 PHLDB2Q86SQ0 1253 aa14.56□□□□□ -0.08
CLN3-235ENST00000568497 ZNF606Q8WXB4 792 aa14.56□□□□□ -0.08
CLN3-235ENST00000568497 EDEM1Q92611 657 aa14.56□□□□□ -0.08
CLN3-235ENST00000568497 SLITRK1Q96PX8 696 aa14.56□□□□□ -0.08
CLN3-235ENST00000568497 NAA15Q9BXJ9 866 aaKnown RBP14.56□□□□□ -0.08
CLN3-235ENST00000568497 TDP1Q9NUW8 608 aa14.56□□□□□ -0.08
CLN3-235ENST00000568497 CFAP97Q9P2B7 532 aa14.56□□□□□ -0.08
CLN3-235ENST00000568497 MBD1Q9UIS9 605 aaPredicted RBP14.56□□□□□ -0.08
CLN3-235ENST00000568497 NAGPAQ9UK23 515 aa14.56□□□□□ -0.08
CLN3-235ENST00000568497 CNTN6Q9UQ52 1028 aa14.56□□□□□ -0.08
CLN3-235ENST00000568497 APC2O95996 2303 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 CELSR3Q9NYQ7 3312 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 ADAMTS9Q9P2N4 1935 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 OPHN1O60890 802 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 OAS1P00973 400 aaKnown RBP14.55□□□□□ -0.08
CLN3-235ENST00000568497 RARGP13631 454 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 UCHL3P15374 230 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 PI4KAP42356 2102 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 BCAT1P54687 386 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 ARID5AQ03989 594 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 BST2Q10589 180 aaKnown RBP14.55□□□□□ -0.08
CLN3-235ENST00000568497 ZNF77Q15935 545 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 CNGA2Q16280 664 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 FKBP15Q5T1M5 1219 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 LPCAT2Q7L5N7 544 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 SYT12Q8IV01 421 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 WDTC1Q8N5D0 677 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 FAXDC2Q96IV6 333 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 PIWIL1Q96J94 861 aaKnown RBP14.55□□□□□ -0.08
CLN3-235ENST00000568497 ZFRQ96KR1 1074 aaKnown RBP14.55□□□□□ -0.08
CLN3-235ENST00000568497 SPACA7Q96KW9 195 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 BPIFA3Q9BQP9 254 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 NAT10Q9H0A0 1025 aaKnown RBP14.55□□□□□ -0.08
CLN3-235ENST00000568497 LRRC4Q9HBW1 653 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 FSCN3Q9NQT6 498 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 ST7Q9NRC1 585 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 HESX1Q9UBX0 185 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 ZMYM5Q9UJ78 669 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 SCML2Q9UQR0 700 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 ASXL3Q9C0F0 2248 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 NAV2Q8IVL1 2488 aa14.55□□□□□ -0.08
CLN3-235ENST00000568497 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.54□□□□□ -0.08
CLN3-235ENST00000568497 YJEFN3A6XGL0 299 aa14.54□□□□□ -0.08
CLN3-235ENST00000568497 CYSRT1A8MQ03 144 aa14.54□□□□□ -0.08
CLN3-235ENST00000568497 SMTNL1A8MU46 457 aa14.54□□□□□ -0.08
CLN3-235ENST00000568497 E7ENQ6 273 aa14.54□□□□□ -0.08
CLN3-235ENST00000568497 XPO1O14980 1071 aaKnown RBP14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms