RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 CD101Q93033 1021 aa10.22□□□□□ -0.77
CLK3-220ENST00000567992 AGPAT1Q99943 283 aa10.22□□□□□ -0.77
CLK3-220ENST00000567992 TRIM62Q9BVG3 475 aa10.22□□□□□ -0.77
CLK3-220ENST00000567992 EDEM3Q9BZQ6 932 aa10.22□□□□□ -0.77
CLK3-220ENST00000567992 DCLK3Q9C098 648 aa10.22□□□□□ -0.77
CLK3-220ENST00000567992 XPO4Q9C0E2 1151 aaKnown RBP10.22□□□□□ -0.77
CLK3-220ENST00000567992 KCNH6Q9H252 994 aa10.22□□□□□ -0.77
CLK3-220ENST00000567992 PDCL3Q9H2J4 239 aa10.22□□□□□ -0.77
CLK3-220ENST00000567992 C2orf42Q9NWW7 574 aa10.22□□□□□ -0.77
CLK3-220ENST00000567992 CALCOCO1Q9P1Z2 691 aa10.22□□□□□ -0.77
CLK3-220ENST00000567992 FANCMQ8IYD8 2048 aa10.22□□□□□ -0.77
CLK3-220ENST00000567992 A0A1W2PQJ5 194 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 TRIM24O15164 1050 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 CACNG3O60359 315 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 LATS1O95835 1130 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 TRUB2O95900 331 aaKnown RBP10.21□□□□□ -0.77
CLK3-220ENST00000567992 PENKP01210 267 aaPredicted RBP10.21□□□□□ -0.77
CLK3-220ENST00000567992 GYPCP04921 128 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 TDGF1P13385 188 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 EIF2DP41214 584 aaKnown RBP10.21□□□□□ -0.77
CLK3-220ENST00000567992 PRKCIP41743 596 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 GSCP56915 257 aaPredicted RBP10.21□□□□□ -0.77
CLK3-220ENST00000567992 AMPD2Q01433 879 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 GAD2Q05329 585 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 RING1Q06587 406 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 NR1H3Q13133 447 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 LRRC32Q14392 662 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 FAM133BQ5BKY9 247 aaKnown RBP10.21□□□□□ -0.77
CLK3-220ENST00000567992 EFHC1Q5JVL4 640 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 FYB2Q5VWT5 728 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 NADSYN1Q6IA69 706 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 TRIM72Q6ZMU5 477 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 MMS22LQ6ZRQ5 1243 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 TOGARAM2Q6ZUX3 1019 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 ERICH1Q86X53 443 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 PHF13Q86YI8 300 aaPredicted RBP10.21□□□□□ -0.77
CLK3-220ENST00000567992 CPXM2Q8N436 756 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 SLC30A5Q8TAD4 765 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 C18orf8Q96DM3 657 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 SERPINB11Q96P15 392 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 SYNCQ9H7C4 482 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 PRMT8Q9NR22 394 aaPredicted RBP10.21□□□□□ -0.77
CLK3-220ENST00000567992 AIPL1Q9NZN9 384 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 TMEM59LQ9UK28 342 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 TLR6Q9Y2C9 796 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 ZNF510Q9Y2H8 683 aa10.21□□□□□ -0.77
CLK3-220ENST00000567992 ARIH1Q9Y4X5 557 aaPredicted RBP10.21□□□□□ -0.77
CLK3-220ENST00000567992 ITIH6Q6UXX5 1313 aa10.21□□□□□ -0.78
CLK3-220ENST00000567992 MUC22E2RYF6 1773 aaPredicted RBP10.21□□□□□ -0.78
CLK3-220ENST00000567992 A0A0A0MRY4 1105 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 NEDD8-MDP1E9PL57 170 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 K7EQS6 105 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 CAPN9O14815 690 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 NCAM2O15394 837 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 AP5Z1O43299 807 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 RNF40O75150 1001 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 TULP3O75386 442 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 TYRP14679 529 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 TFE3P19532 575 aaPredicted RBP10.2□□□□□ -0.78
CLK3-220ENST00000567992 DRD1P21728 446 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 SLC6A4P31645 630 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 FLT3P36888 993 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 SGSHP51688 502 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 TBX4P57082 545 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 SNX16P57768 344 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 KDSRQ06136 332 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 GRSF1Q12849 480 aaKnown RBP eCLIP10.2□□□□□ -0.78
CLK3-220ENST00000567992 ANGPT1Q15389 498 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 ASIC2Q16515 512 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 ANO4Q32M45 955 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 DCAF6Q58WW2 860 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 NUGGCQ68CJ6 796 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 HGSNATQ68CP4 663 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 RNF43Q68DV7 783 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 MAMSTRQ6ZN01 415 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 TPGS1Q6ZTW0 290 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 MON1BQ7L1V2 547 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 ZNF571Q7Z3V5 609 aaPredicted RBP10.2□□□□□ -0.78
CLK3-220ENST00000567992 BNIPLQ7Z465 357 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 C1orf210Q8IVY1 113 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 SYNPOQ8N3V7 929 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 NAT16Q8N8M0 369 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 NT5C3BQ969T7 300 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 AZIN2Q96A70 460 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 ATG2BQ96BY7 2078 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 MYEOVQ96EZ4 313 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 PRICKLE1Q96MT3 831 aaPredicted RBP10.2□□□□□ -0.78
CLK3-220ENST00000567992 NPY6RQ99463 290 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 PRRX2Q99811 253 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 C11orf70Q9BRQ4 267 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 IER2Q9BTL4 223 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 NUP58Q9BVL2 599 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 BBS2Q9BXC9 721 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 SPATA6Q9NWH7 488 aaPredicted RBP10.2□□□□□ -0.78
CLK3-220ENST00000567992 TAS2R14Q9NYV8 317 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 XPO7Q9UIA9 1087 aaKnown RBP10.2□□□□□ -0.78
CLK3-220ENST00000567992 FBXO10Q9UK96 956 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 HCN2Q9UL51 889 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 CLEC4EQ9ULY5 219 aa10.2□□□□□ -0.78
CLK3-220ENST00000567992 GOLGA6L7A0A1B0GV03 622 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms