RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 SLC6A14Q9UN76 642 aa19.61■□□□□ 0.73
CLN3-218ENST00000565688 ATXN2Q99700 1313 aaKnown RBP19.6■□□□□ 0.73
CLN3-218ENST00000565688 PSMA7O14818 248 aa19.6■□□□□ 0.73
CLN3-218ENST00000565688 SERPINF2P08697 491 aa19.6■□□□□ 0.73
CLN3-218ENST00000565688 VDRP11473 427 aa19.6■□□□□ 0.73
CLN3-218ENST00000565688 MAPK8P45983 427 aa19.6■□□□□ 0.73
CLN3-218ENST00000565688 PMS1P54277 932 aaKnown RBP19.6■□□□□ 0.73
CLN3-218ENST00000565688 GFPT1Q06210 699 aaPredicted RBP19.6■□□□□ 0.73
CLN3-218ENST00000565688 PDE4CQ08493 712 aa19.6■□□□□ 0.73
CLN3-218ENST00000565688 ZNF252P-AS1Q0IIN9 211 aa19.6■□□□□ 0.73
CLN3-218ENST00000565688 BECN1Q14457 450 aa19.6■□□□□ 0.73
CLN3-218ENST00000565688 EIF4HQ15056 248 aaKnown RBP19.6■□□□□ 0.73
CLN3-218ENST00000565688 ULBP1Q9BZM6 244 aa19.6■□□□□ 0.73
CLN3-218ENST00000565688 CYP8B1Q9UNU6 501 aa19.6■□□□□ 0.73
CLN3-218ENST00000565688 RAD54BQ9Y620 910 aa19.6■□□□□ 0.73
CLN3-218ENST00000565688 STON1Q9Y6Q2 735 aa19.6■□□□□ 0.73
CLN3-218ENST00000565688 GON4LQ3T8J9 2241 aa19.6■□□□□ 0.73
CLN3-218ENST00000565688 GIPC1O14908 333 aa19.59■□□□□ 0.73
CLN3-218ENST00000565688 NDUFS2O75306 463 aa19.59■□□□□ 0.73
CLN3-218ENST00000565688 SETSIPP0DME0 302 aa19.59■□□□□ 0.73
CLN3-218ENST00000565688 CD19P15391 556 aa19.59■□□□□ 0.73
CLN3-218ENST00000565688 PPP1R2P41236 205 aa19.59■□□□□ 0.73
CLN3-218ENST00000565688 HARS2P49590 506 aaKnown RBP19.59■□□□□ 0.73
CLN3-218ENST00000565688 ATXN3P54252 364 aaPredicted RBP19.59■□□□□ 0.73
CLN3-218ENST00000565688 NUCB2P80303 420 aa19.59■□□□□ 0.73
CLN3-218ENST00000565688 TRIP4Q15650 581 aaPredicted RBP19.59■□□□□ 0.73
CLN3-218ENST00000565688 ANKS1BQ7Z6G8 1248 aa19.59■□□□□ 0.73
CLN3-218ENST00000565688 METTL3Q86U44 580 aaKnown RBP19.59■□□□□ 0.73
CLN3-218ENST00000565688 FAM217AQ8IXS0 508 aa19.59■□□□□ 0.73
CLN3-218ENST00000565688 SIX6OS1Q8N1H7 587 aa19.59■□□□□ 0.73
CLN3-218ENST00000565688 DEFB119Q8N690 84 aa19.59■□□□□ 0.73
CLN3-218ENST00000565688 DDI1Q8WTU0 396 aa19.59■□□□□ 0.73
CLN3-218ENST00000565688 RNF139Q8WU17 664 aa19.59■□□□□ 0.73
CLN3-218ENST00000565688 KCTD13Q8WZ19 329 aa19.59■□□□□ 0.73
CLN3-218ENST00000565688 FOXJ1Q92949 421 aa19.59■□□□□ 0.73
CLN3-218ENST00000565688 P2RY11Q96G91 374 aa19.59■□□□□ 0.73
CLN3-218ENST00000565688 DHTKD1Q96HY7 919 aaPredicted RBP19.59■□□□□ 0.73
CLN3-218ENST00000565688 SLC32A1Q9H598 525 aa19.59■□□□□ 0.73
CLN3-218ENST00000565688 THAP10Q9P2Z0 257 aaPredicted RBP19.59■□□□□ 0.73
CLN3-218ENST00000565688 HBS1LQ9Y450 684 aaKnown RBP19.59■□□□□ 0.73
CLN3-218ENST00000565688 FRYQ5TBA9 3013 aa19.58■□□□□ 0.73
CLN3-218ENST00000565688 WASH3PC4AMC7 463 aa19.58■□□□□ 0.72
CLN3-218ENST00000565688 TULP2O00295 520 aa19.58■□□□□ 0.72
CLN3-218ENST00000565688 TIMM44O43615 452 aa19.58■□□□□ 0.72
CLN3-218ENST00000565688 ZNF445P59923 1031 aa19.58■□□□□ 0.72
CLN3-218ENST00000565688 ADIGQ0VDE8 80 aa19.58■□□□□ 0.72
CLN3-218ENST00000565688 ENPP2Q13822 863 aa19.58■□□□□ 0.72
CLN3-218ENST00000565688 GEN1Q17RS7 908 aa19.58■□□□□ 0.72
CLN3-218ENST00000565688 SYCP2LQ5T4T6 812 aa19.58■□□□□ 0.72
CLN3-218ENST00000565688 KIAA1324Q6UXG2 1013 aaKnown RBP19.58■□□□□ 0.72
CLN3-218ENST00000565688 BHLHA9Q7RTU4 235 aa19.58■□□□□ 0.72
CLN3-218ENST00000565688 FMNL3Q8IVF7 1028 aa19.58■□□□□ 0.72
CLN3-218ENST00000565688 SCML4Q8N228 414 aa19.58■□□□□ 0.72
CLN3-218ENST00000565688 TRIML1Q8N9V2 468 aa19.58■□□□□ 0.72
CLN3-218ENST00000565688 ERLEC1Q96DZ1 483 aa19.58■□□□□ 0.72
CLN3-218ENST00000565688 PIWIL1Q96J94 861 aaKnown RBP19.58■□□□□ 0.72
CLN3-218ENST00000565688 HSPA12BQ96MM6 686 aa19.58■□□□□ 0.72
CLN3-218ENST00000565688 CEP63Q96MT8 703 aa19.58■□□□□ 0.72
CLN3-218ENST00000565688 CAPN10Q9HC96 672 aa19.58■□□□□ 0.72
CLN3-218ENST00000565688 TRIM49BA6NDI0 452 aa19.57■□□□□ 0.72
CLN3-218ENST00000565688 UPK3BL1B0FP48 263 aa19.57■□□□□ 0.72
CLN3-218ENST00000565688 UPK3BL2E5RIL1 263 aa19.57■□□□□ 0.72
CLN3-218ENST00000565688 O00370 1275 aa19.57■□□□□ 0.72
CLN3-218ENST00000565688 PMM2O15305 246 aa19.57■□□□□ 0.72
CLN3-218ENST00000565688 SYNCRIPO60506 623 aaKnown RBP19.57■□□□□ 0.72
CLN3-218ENST00000565688 LATS1O95835 1130 aa19.57■□□□□ 0.72
CLN3-218ENST00000565688 PAEPP09466 180 aa19.57■□□□□ 0.72
CLN3-218ENST00000565688 FMO5P49326 533 aa19.57■□□□□ 0.72
CLN3-218ENST00000565688 CETN1Q12798 172 aa19.57■□□□□ 0.72
CLN3-218ENST00000565688 LRMPQ12912 555 aa19.57■□□□□ 0.72
CLN3-218ENST00000565688 FUT11Q495W5 492 aa19.57■□□□□ 0.72
CLN3-218ENST00000565688 MPPE1Q53F39 396 aa19.57■□□□□ 0.72
CLN3-218ENST00000565688 BSPRYQ5W0U4 402 aa19.57■□□□□ 0.72
CLN3-218ENST00000565688 SLC41A1Q8IVJ1 513 aa19.57■□□□□ 0.72
CLN3-218ENST00000565688 ELOA2Q8IYF1 753 aaPredicted RBP19.57■□□□□ 0.72
CLN3-218ENST00000565688 HDDC3Q8N4P3 179 aa19.57■□□□□ 0.72
CLN3-218ENST00000565688 UBR7Q8N806 425 aa19.57■□□□□ 0.72
CLN3-218ENST00000565688 ZNF419Q96HQ0 510 aaPredicted RBP19.57■□□□□ 0.72
CLN3-218ENST00000565688 PRDM16Q9HAZ2 1276 aa19.57■□□□□ 0.72
CLN3-218ENST00000565688 CNGB3Q9NQW8 809 aa19.57■□□□□ 0.72
CLN3-218ENST00000565688 ABCC13Q9NSE7 274 aa19.57■□□□□ 0.72
CLN3-218ENST00000565688 ELOVL2Q9NXB9 296 aa19.57■□□□□ 0.72
CLN3-218ENST00000565688 SUSD2Q9UGT4 822 aa19.57■□□□□ 0.72
CLN3-218ENST00000565688 PI4KAP42356 2102 aa19.57■□□□□ 0.72
CLN3-218ENST00000565688 KRT37O76014 449 aa19.56■□□□□ 0.72
CLN3-218ENST00000565688 SYPP08247 313 aa19.56■□□□□ 0.72
CLN3-218ENST00000565688 CD6P30203 668 aa19.56■□□□□ 0.72
CLN3-218ENST00000565688 IL12RB1P42701 662 aa19.56■□□□□ 0.72
CLN3-218ENST00000565688 WDR45BQ5MNZ6 344 aa19.56■□□□□ 0.72
CLN3-218ENST00000565688 LCLAT1Q6UWP7 414 aa19.56■□□□□ 0.72
CLN3-218ENST00000565688 DEFB124Q8NES8 71 aa19.56■□□□□ 0.72
CLN3-218ENST00000565688 UBA3Q8TBC4 463 aa19.56■□□□□ 0.72
CLN3-218ENST00000565688 NDRG1Q92597 394 aaKnown RBP19.56■□□□□ 0.72
CLN3-218ENST00000565688 ERCC4Q92889 916 aaPredicted RBP19.56■□□□□ 0.72
CLN3-218ENST00000565688 NT5C1BQ96P26 610 aa19.56■□□□□ 0.72
CLN3-218ENST00000565688 GTPBP2Q9BX10 602 aaKnown RBP19.56■□□□□ 0.72
CLN3-218ENST00000565688 SLC6A17Q9H1V8 727 aa19.56■□□□□ 0.72
CLN3-218ENST00000565688 CEP192Q8TEP8 1941 aa19.56■□□□□ 0.72
CLN3-218ENST00000565688 ASCC3Q8N3C0 2202 aaKnown RBP19.55■□□□□ 0.72
CLN3-218ENST00000565688 YJEFN3A6XGL0 299 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms