RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 IFNAR2P48551 515 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 RPL34P49207 117 aaKnown RBP18.03■□□□□ 0.48
CLN3-217ENST00000565354 SHC2P98077 582 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 FMO1Q01740 532 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 EFEMP1Q12805 493 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 USP4Q13107 963 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 TRIM14Q14142 442 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 AASDHQ4L235 1098 aaPredicted RBP18.03■□□□□ 0.48
CLN3-217ENST00000565354 DGKKQ5KSL6 1271 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 N4BP2L1Q5TBK1 243 aaPredicted RBP18.03■□□□□ 0.48
CLN3-217ENST00000565354 NAA35Q5VZE5 725 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 BSPRYQ5W0U4 402 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 SPECC1LQ69YQ0 1117 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 SARM1Q6SZW1 724 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 Q6ZS52 159 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 TMEM110Q86TL2 294 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 GAS2L3Q86XJ1 694 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 MIB1Q86YT6 1006 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 WDTC1Q8N5D0 677 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 CLEC4CQ8WTT0 213 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 EDEM1Q92611 657 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 CPXM1Q96SM3 734 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 AGPAT1Q99943 283 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 TRIM62Q9BVG3 475 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 C2orf42Q9NWW7 574 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 CFAP97Q9P2B7 532 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 HELZP42694 1942 aaKnown RBP18.03■□□□□ 0.48
CLN3-217ENST00000565354 LAMA1P25391 3075 aa18.02■□□□□ 0.48
CLN3-217ENST00000565354 TM4SF5O14894 197 aa18.02■□□□□ 0.48
CLN3-217ENST00000565354 MDM4O15151 490 aa18.02■□□□□ 0.48
CLN3-217ENST00000565354 GABBR2O75899 941 aa18.02■□□□□ 0.48
CLN3-217ENST00000565354 TNFAIP3P21580 790 aa18.02■□□□□ 0.48
CLN3-217ENST00000565354 CDH5P33151 784 aaPredicted RBP18.02■□□□□ 0.48
CLN3-217ENST00000565354 SOX9P48436 509 aa18.02■□□□□ 0.48
CLN3-217ENST00000565354 KPNA1P52294 538 aaPredicted RBP18.02■□□□□ 0.48
CLN3-217ENST00000565354 ZBED6P86452 979 aa18.02■□□□□ 0.48
CLN3-217ENST00000565354 KLHL30Q0D2K2 578 aa18.02■□□□□ 0.48
CLN3-217ENST00000565354 FCHO2Q0JRZ9 810 aa18.02■□□□□ 0.48
CLN3-217ENST00000565354 ZNF77Q15935 545 aa18.02■□□□□ 0.48
CLN3-217ENST00000565354 TDRD12Q587J7 1177 aaKnown RBP18.02■□□□□ 0.48
CLN3-217ENST00000565354 TOGARAM2Q6ZUX3 1019 aa18.02■□□□□ 0.48
CLN3-217ENST00000565354 WDR5BQ86VZ2 330 aa18.02■□□□□ 0.48
CLN3-217ENST00000565354 CPA5Q8WXQ8 436 aa18.02■□□□□ 0.48
CLN3-217ENST00000565354 ZFYVE19Q96K21 471 aa18.02■□□□□ 0.48
CLN3-217ENST00000565354 LSM7Q9UK45 103 aaKnown RBP18.02■□□□□ 0.48
CLN3-217ENST00000565354 CAPN11Q9UMQ6 739 aa18.02■□□□□ 0.48
CLN3-217ENST00000565354 PAPSS1O43252 624 aaPredicted RBP18.01■□□□□ 0.47
CLN3-217ENST00000565354 ERBB2P04626 1255 aa18.01■□□□□ 0.47
CLN3-217ENST00000565354 NCAM1P13591 858 aa18.01■□□□□ 0.47
CLN3-217ENST00000565354 TCF3P15923 654 aa18.01■□□□□ 0.47
CLN3-217ENST00000565354 CHRNB2P17787 502 aa18.01■□□□□ 0.47
CLN3-217ENST00000565354 NSFP46459 744 aaKnown RBP18.01■□□□□ 0.47
CLN3-217ENST00000565354 NOMO3P69849 1222 aa18.01■□□□□ 0.47
CLN3-217ENST00000565354 SF3A2Q15428 464 aaKnown RBP18.01■□□□□ 0.47
CLN3-217ENST00000565354 TSR1Q2NL82 804 aaKnown RBP18.01■□□□□ 0.47
CLN3-217ENST00000565354 PTPN20Q4JDL3 420 aa18.01■□□□□ 0.47
CLN3-217ENST00000565354 EFHC1Q5JVL4 640 aa18.01■□□□□ 0.47
CLN3-217ENST00000565354 KLHDC10Q6PID8 442 aa18.01■□□□□ 0.47
CLN3-217ENST00000565354 TXNDC11Q6PKC3 985 aa18.01■□□□□ 0.47
CLN3-217ENST00000565354 FAM183BPQ6ZVS7 135 aa18.01■□□□□ 0.47
CLN3-217ENST00000565354 BHLHA9Q7RTU4 235 aa18.01■□□□□ 0.47
CLN3-217ENST00000565354 RALGPS2Q86X27 583 aaPredicted RBP18.01■□□□□ 0.47
CLN3-217ENST00000565354 ZDHHC17Q8IUH5 632 aa18.01■□□□□ 0.47
CLN3-217ENST00000565354 VSTM4Q8IW00 320 aa18.01■□□□□ 0.47
CLN3-217ENST00000565354 ZNF276Q8N554 614 aa18.01■□□□□ 0.47
CLN3-217ENST00000565354 C12orf50Q8NA57 414 aaPredicted RBP18.01■□□□□ 0.47
CLN3-217ENST00000565354 C18orf8Q96DM3 657 aa18.01■□□□□ 0.47
CLN3-217ENST00000565354 LRRC3BQ96PB8 259 aa18.01■□□□□ 0.47
CLN3-217ENST00000565354 GKN1Q9NS71 199 aa18.01■□□□□ 0.47
CLN3-217ENST00000565354 DUS2Q9NX74 493 aaKnown RBP18.01■□□□□ 0.47
CLN3-217ENST00000565354 AIPL1Q9NZN9 384 aa18.01■□□□□ 0.47
CLN3-217ENST00000565354 MARCH2Q9P0N8 246 aa18.01■□□□□ 0.47
CLN3-217ENST00000565354 TJP2Q9UDY2 1190 aa18.01■□□□□ 0.47
CLN3-217ENST00000565354 RALYQ9UKM9 306 aaKnown RBP18.01■□□□□ 0.47
CLN3-217ENST00000565354 ZFYVE26Q68DK2 2539 aa18.01■□□□□ 0.47
CLN3-217ENST00000565354 ZZEF1O43149 2961 aa18■□□□□ 0.47
CLN3-217ENST00000565354 ATG2BQ96BY7 2078 aa18■□□□□ 0.47
CLN3-217ENST00000565354 SLC12A8A0AV02 714 aa18■□□□□ 0.47
CLN3-217ENST00000565354 SPECC1L-ADORA2AF8WAN1 911 aa18■□□□□ 0.47
CLN3-217ENST00000565354 SLC9A3R1O14745 358 aaPredicted RBP18■□□□□ 0.47
CLN3-217ENST00000565354 GYPCP04921 128 aa18■□□□□ 0.47
CLN3-217ENST00000565354 HMBSP08397 361 aa18■□□□□ 0.47
CLN3-217ENST00000565354 ZNF806P0C7X5 589 aa18■□□□□ 0.47
CLN3-217ENST00000565354 CASP14P31944 242 aa18■□□□□ 0.47
CLN3-217ENST00000565354 CTHP32929 405 aa18■□□□□ 0.47
CLN3-217ENST00000565354 COG7P83436 770 aa18■□□□□ 0.47
CLN3-217ENST00000565354 PDGFRLQ15198 375 aa18■□□□□ 0.47
CLN3-217ENST00000565354 TMC6Q7Z403 805 aa18■□□□□ 0.47
CLN3-217ENST00000565354 IRF2BP2Q7Z5L9 587 aa18■□□□□ 0.47
CLN3-217ENST00000565354 LOXL4Q96JB6 756 aa18■□□□□ 0.47
CLN3-217ENST00000565354 ARRDC1-AS1Q9H2J1 176 aa18■□□□□ 0.47
CLN3-217ENST00000565354 HAUS4Q9H6D7 363 aa18■□□□□ 0.47
CLN3-217ENST00000565354 WNT6Q9Y6F9 365 aa18■□□□□ 0.47
CLN3-217ENST00000565354 IGF2RP11717 2491 aa17.99■□□□□ 0.47
CLN3-217ENST00000565354 EML5Q05BV3 1969 aa17.99■□□□□ 0.47
CLN3-217ENST00000565354 AXIN1O15169 862 aa17.99■□□□□ 0.47
CLN3-217ENST00000565354 CYP1A1P04798 512 aaPredicted RBP17.99■□□□□ 0.47
CLN3-217ENST00000565354 HOXC13P31276 330 aa17.99■□□□□ 0.47
CLN3-217ENST00000565354 YWHAZP63104 245 aaKnown RBP17.99■□□□□ 0.47
CLN3-217ENST00000565354 SLC6A3Q01959 620 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms