RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 MEA1Q16626 185 aa15.54■□□□□ 0.08
CLN3-213ENST00000565047 GEN1Q17RS7 908 aa15.54■□□□□ 0.08
CLN3-213ENST00000565047 TMEM215Q68D42 235 aa15.54■□□□□ 0.08
CLN3-213ENST00000565047 KIAA1211LQ6NV74 962 aa15.54■□□□□ 0.08
CLN3-213ENST00000565047 RSRC2Q7L4I2 434 aaKnown RBP15.54■□□□□ 0.08
CLN3-213ENST00000565047 TRMT11Q7Z4G4 463 aaKnown RBP15.54■□□□□ 0.08
CLN3-213ENST00000565047 ABCA7Q8IZY2 2146 aa15.54■□□□□ 0.08
CLN3-213ENST00000565047 SIX6OS1Q8N1H7 587 aa15.54■□□□□ 0.08
CLN3-213ENST00000565047 RLN3Q8WXF3 142 aa15.54■□□□□ 0.08
CLN3-213ENST00000565047 BHMTQ93088 406 aa15.54■□□□□ 0.08
CLN3-213ENST00000565047 IPO9Q96P70 1041 aaKnown RBP15.54■□□□□ 0.08
CLN3-213ENST00000565047 RTKNQ9BST9 563 aa15.54■□□□□ 0.08
CLN3-213ENST00000565047 CRACR2AQ9BSW2 395 aa15.54■□□□□ 0.08
CLN3-213ENST00000565047 SLC4A5Q9BY07 1137 aa15.54■□□□□ 0.08
CLN3-213ENST00000565047 SMOC1Q9H4F8 434 aa15.54■□□□□ 0.08
CLN3-213ENST00000565047 POLMQ9NP87 494 aaPredicted RBP15.54■□□□□ 0.08
CLN3-213ENST00000565047 UBE2TQ9NPD8 197 aaPredicted RBP15.54■□□□□ 0.08
CLN3-213ENST00000565047 ACP6Q9NPH0 428 aa15.54■□□□□ 0.08
CLN3-213ENST00000565047 PLXND1Q9Y4D7 1925 aa15.53■□□□□ 0.08
CLN3-213ENST00000565047 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.53■□□□□ 0.08
CLN3-213ENST00000565047 TCRBV21S2A2A0A5A6 115 aa15.53■□□□□ 0.08
CLN3-213ENST00000565047 GTPBP10A4D1E9 387 aaKnown RBP15.53■□□□□ 0.08
CLN3-213ENST00000565047 WASH3PC4AMC7 463 aa15.53■□□□□ 0.08
CLN3-213ENST00000565047 PIK3R2O00459 728 aa15.53■□□□□ 0.08
CLN3-213ENST00000565047 ALDH1A2O94788 518 aa15.53■□□□□ 0.08
CLN3-213ENST00000565047 LATS1O95835 1130 aa15.53■□□□□ 0.08
CLN3-213ENST00000565047 PON1P27169 355 aa15.53■□□□□ 0.08
CLN3-213ENST00000565047 LIMK1P53667 647 aa15.53■□□□□ 0.08
CLN3-213ENST00000565047 ELF2Q15723 593 aa15.53■□□□□ 0.08
CLN3-213ENST00000565047 SMYD5Q6GMV2 418 aa15.53■□□□□ 0.08
CLN3-213ENST00000565047 DENND1BQ6P3S1 775 aa15.53■□□□□ 0.08
CLN3-213ENST00000565047 NUDT18Q6ZVK8 323 aa15.53■□□□□ 0.08
CLN3-213ENST00000565047 ENOSF1Q7L5Y1 443 aa15.53■□□□□ 0.08
CLN3-213ENST00000565047 C11orf74Q86VG3 221 aa15.53■□□□□ 0.08
CLN3-213ENST00000565047 WDTC1Q8N5D0 677 aa15.53■□□□□ 0.08
CLN3-213ENST00000565047 STK32AQ8WU08 396 aa15.53■□□□□ 0.08
CLN3-213ENST00000565047 ZNF606Q8WXB4 792 aa15.53■□□□□ 0.08
CLN3-213ENST00000565047 SIX2Q9NPC8 291 aa15.53■□□□□ 0.08
CLN3-213ENST00000565047 VPS45Q9NRW7 570 aa15.53■□□□□ 0.08
CLN3-213ENST00000565047 LMBRD1Q9NUN5 540 aa15.53■□□□□ 0.08
CLN3-213ENST00000565047 AJAP1Q9UKB5 411 aaPredicted RBP15.53■□□□□ 0.08
CLN3-213ENST00000565047 CDV3Q9UKY7 258 aaKnown RBP15.53■□□□□ 0.08
CLN3-213ENST00000565047 RALGAPA1Q6GYQ0 2036 aa15.52■□□□□ 0.08
CLN3-213ENST00000565047 DCDC2BA2VCK2 349 aa15.52■□□□□ 0.08
CLN3-213ENST00000565047 MSI1O43347 362 aaKnown RBP15.52■□□□□ 0.08
CLN3-213ENST00000565047 FBXO21O94952 628 aa15.52■□□□□ 0.08
CLN3-213ENST00000565047 LTFP02788 710 aa15.52■□□□□ 0.08
CLN3-213ENST00000565047 C7P10643 843 aa15.52■□□□□ 0.08
CLN3-213ENST00000565047 HOXB2P14652 356 aa15.52■□□□□ 0.08
CLN3-213ENST00000565047 HOXD9P28356 352 aaPredicted RBP15.52■□□□□ 0.08
CLN3-213ENST00000565047 WASP42768 502 aa15.52■□□□□ 0.08
CLN3-213ENST00000565047 EIF4EBP2Q13542 120 aaPredicted RBP15.52■□□□□ 0.08
CLN3-213ENST00000565047 DPCR1Q3MIW9 517 aa15.52■□□□□ 0.08
CLN3-213ENST00000565047 MIIPQ5JXC2 388 aa15.52■□□□□ 0.08
CLN3-213ENST00000565047 BEND5Q7L4P6 421 aa15.52■□□□□ 0.08
CLN3-213ENST00000565047 KIAA0907Q7Z7F0 614 aaPredicted RBP15.52■□□□□ 0.08
CLN3-213ENST00000565047 TMEM110Q86TL2 294 aa15.52■□□□□ 0.08
CLN3-213ENST00000565047 SCUBE3Q8IX30 993 aa15.52■□□□□ 0.08
CLN3-213ENST00000565047 IPO4Q8TEX9 1081 aaKnown RBP15.52■□□□□ 0.08
CLN3-213ENST00000565047 HMGB4Q8WW32 186 aa15.52■□□□□ 0.08
CLN3-213ENST00000565047 SLC2A11Q9BYW1 496 aa15.52■□□□□ 0.08
CLN3-213ENST00000565047 THAP10Q9P2Z0 257 aaPredicted RBP15.52■□□□□ 0.08
CLN3-213ENST00000565047 CAVIN2O95810 425 aa15.51■□□□□ 0.07
CLN3-213ENST00000565047 ERCC5P28715 1186 aaPredicted RBP15.51■□□□□ 0.07
CLN3-213ENST00000565047 HARS2P49590 506 aaKnown RBP15.51■□□□□ 0.07
CLN3-213ENST00000565047 SGSHP51688 502 aa15.51■□□□□ 0.07
CLN3-213ENST00000565047 RING1Q06587 406 aa15.51■□□□□ 0.07
CLN3-213ENST00000565047 FAM133BQ5BKY9 247 aaKnown RBP15.51■□□□□ 0.07
CLN3-213ENST00000565047 SPDYCQ5MJ68 293 aa15.51■□□□□ 0.07
CLN3-213ENST00000565047 ADGRF1Q5T601 910 aa15.51■□□□□ 0.07
CLN3-213ENST00000565047 TCEAL6Q6IPX3 200 aa15.51■□□□□ 0.07
CLN3-213ENST00000565047 GBP6Q6ZN66 633 aa15.51■□□□□ 0.07
CLN3-213ENST00000565047 CHPFQ8IZ52 775 aa15.51■□□□□ 0.07
CLN3-213ENST00000565047 RNF139Q8WU17 664 aa15.51■□□□□ 0.07
CLN3-213ENST00000565047 SHC3Q92529 594 aa15.51■□□□□ 0.07
CLN3-213ENST00000565047 TCEAL3Q969E4 200 aa15.51■□□□□ 0.07
CLN3-213ENST00000565047 AZIN2Q96A70 460 aa15.51■□□□□ 0.07
CLN3-213ENST00000565047 SLC39A13Q96H72 371 aa15.51■□□□□ 0.07
CLN3-213ENST00000565047 LMLNQ96KR4 655 aa15.51■□□□□ 0.07
CLN3-213ENST00000565047 THAP9Q9H5L6 903 aa15.51■□□□□ 0.07
CLN3-213ENST00000565047 CACNA2D2Q9NY47 1150 aa15.51■□□□□ 0.07
CLN3-213ENST00000565047 CALCOCO1Q9P1Z2 691 aa15.51■□□□□ 0.07
CLN3-213ENST00000565047 APEX2Q9UBZ4 518 aa15.51■□□□□ 0.07
CLN3-213ENST00000565047 TNRC6BQ9UPQ9 1833 aaKnown RBP15.5■□□□□ 0.07
CLN3-213ENST00000565047 PAPSS1O43252 624 aaPredicted RBP15.5■□□□□ 0.07
CLN3-213ENST00000565047 LETM1O95202 739 aaPredicted RBP15.5■□□□□ 0.07
CLN3-213ENST00000565047 KRT5P13647 590 aa15.5■□□□□ 0.07
CLN3-213ENST00000565047 NDUFV2P19404 249 aa15.5■□□□□ 0.07
CLN3-213ENST00000565047 HLA-FP30511 346 aa15.5■□□□□ 0.07
CLN3-213ENST00000565047 GBP1P32455 592 aa15.5■□□□□ 0.07
CLN3-213ENST00000565047 IL12RB1P42701 662 aa15.5■□□□□ 0.07
CLN3-213ENST00000565047 PTGER3P43115 390 aa15.5■□□□□ 0.07
CLN3-213ENST00000565047 CREB5Q02930 508 aa15.5■□□□□ 0.07
CLN3-213ENST00000565047 EXOC3L4Q17RC7 722 aa15.5■□□□□ 0.07
CLN3-213ENST00000565047 SYPL2Q5VXT5 272 aa15.5■□□□□ 0.07
CLN3-213ENST00000565047 PEAR1Q5VY43 1037 aaPredicted RBP15.5■□□□□ 0.07
CLN3-213ENST00000565047 NADSYN1Q6IA69 706 aa15.5■□□□□ 0.07
CLN3-213ENST00000565047 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.5■□□□□ 0.07
CLN3-213ENST00000565047 DQX1Q8TE96 717 aaKnown RBP15.5■□□□□ 0.07
CLN3-213ENST00000565047 MYEOVQ96EZ4 313 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms