RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 KRBA2Q6ZNG9 492 aa17.68■□□□□ 0.42
CLN3-211ENST00000564091 RSRC2Q7L4I2 434 aaKnown RBP17.68■□□□□ 0.42
CLN3-211ENST00000564091 SMYD4Q8IYR2 804 aaPredicted RBP17.68■□□□□ 0.42
CLN3-211ENST00000564091 CHCHD4Q8N4Q1 142 aa17.68■□□□□ 0.42
CLN3-211ENST00000564091 SORCS1Q8WY21 1168 aa17.68■□□□□ 0.42
CLN3-211ENST00000564091 NUP205Q92621 2012 aa17.68■□□□□ 0.42
CLN3-211ENST00000564091 FOXJ1Q92949 421 aa17.68■□□□□ 0.42
CLN3-211ENST00000564091 TATDN2Q93075 761 aa17.68■□□□□ 0.42
CLN3-211ENST00000564091 PIWIL1Q96J94 861 aaKnown RBP17.68■□□□□ 0.42
CLN3-211ENST00000564091 DNAI2Q9GZS0 605 aa17.68■□□□□ 0.42
CLN3-211ENST00000564091 FAM124BQ9H5Z6 455 aaPredicted RBP17.68■□□□□ 0.42
CLN3-211ENST00000564091 DNAAF2Q9NVR5 837 aaKnown RBP17.68■□□□□ 0.42
CLN3-211ENST00000564091 RAB20Q9NX57 234 aa17.68■□□□□ 0.42
CLN3-211ENST00000564091 MARCH2Q9P0N8 246 aa17.68■□□□□ 0.42
CLN3-211ENST00000564091 NEUROG3Q9Y4Z2 214 aa17.68■□□□□ 0.42
CLN3-211ENST00000564091 FAM208BQ5VWN6 2430 aa17.68■□□□□ 0.42
CLN3-211ENST00000564091 KCNJ18B7U540 433 aa17.67■□□□□ 0.42
CLN3-211ENST00000564091 TULP2O00295 520 aa17.67■□□□□ 0.42
CLN3-211ENST00000564091 GNSP15586 552 aa17.67■□□□□ 0.42
CLN3-211ENST00000564091 MXI1P50539 228 aa17.67■□□□□ 0.42
CLN3-211ENST00000564091 TKTL1P51854 596 aa17.67■□□□□ 0.42
CLN3-211ENST00000564091 RAB41Q5JT25 222 aa17.67■□□□□ 0.42
CLN3-211ENST00000564091 WDR45BQ5MNZ6 344 aa17.67■□□□□ 0.42
CLN3-211ENST00000564091 METTL3Q86U44 580 aaKnown RBP17.67■□□□□ 0.42
CLN3-211ENST00000564091 CACUL1Q86Y37 369 aa17.67■□□□□ 0.42
CLN3-211ENST00000564091 TMPRSS6Q8IU80 811 aa17.67■□□□□ 0.42
CLN3-211ENST00000564091 ANKRD52Q8NB46 1076 aa17.67■□□□□ 0.42
CLN3-211ENST00000564091 ZCCHC14Q8WYQ9 949 aaKnown RBP17.67■□□□□ 0.42
CLN3-211ENST00000564091 GPR174Q9BXC1 333 aa17.67■□□□□ 0.42
CLN3-211ENST00000564091 UBXN6Q9BZV1 441 aa17.67■□□□□ 0.42
CLN3-211ENST00000564091 GOLPH3LQ9H4A5 285 aa17.67■□□□□ 0.42
CLN3-211ENST00000564091 ITM2CQ9NQX7 267 aa17.67■□□□□ 0.42
CLN3-211ENST00000564091 ELOVL2Q9NXB9 296 aa17.67■□□□□ 0.42
CLN3-211ENST00000564091 WSB2Q9NYS7 404 aaPredicted RBP17.67■□□□□ 0.42
CLN3-211ENST00000564091 USP36Q9P275 1121 aaKnown RBP17.67■□□□□ 0.42
CLN3-211ENST00000564091 SUSD2Q9UGT4 822 aa17.67■□□□□ 0.42
CLN3-211ENST00000564091 STRIP2Q9ULQ0 834 aa17.67■□□□□ 0.42
CLN3-211ENST00000564091 MSRB2Q9Y3D2 182 aa17.67■□□□□ 0.42
CLN3-211ENST00000564091 FREM2Q5SZK8 3169 aa17.66■□□□□ 0.42
CLN3-211ENST00000564091 TMEM8BA6NDV4 472 aa17.66■□□□□ 0.42
CLN3-211ENST00000564091 MEI4A8MW99 385 aa17.66■□□□□ 0.42
CLN3-211ENST00000564091 SYNCRIPO60506 623 aaKnown RBP17.66■□□□□ 0.42
CLN3-211ENST00000564091 GJB3O75712 270 aa17.66■□□□□ 0.42
CLN3-211ENST00000564091 CYBBP04839 570 aa17.66■□□□□ 0.42
CLN3-211ENST00000564091 NCAM1P13591 858 aa17.66■□□□□ 0.42
CLN3-211ENST00000564091 MCCD1P59942 119 aaPredicted RBP17.66■□□□□ 0.42
CLN3-211ENST00000564091 GRIK2Q13002 908 aa17.66■□□□□ 0.42
CLN3-211ENST00000564091 ENPP2Q13822 863 aa17.66■□□□□ 0.42
CLN3-211ENST00000564091 ZNF234Q14588 700 aa17.66■□□□□ 0.42
CLN3-211ENST00000564091 TMEM215Q68D42 235 aa17.66■□□□□ 0.42
CLN3-211ENST00000564091 ARHGAP17Q68EM7 881 aa17.66■□□□□ 0.42
CLN3-211ENST00000564091 ANKS1BQ7Z6G8 1248 aa17.66■□□□□ 0.42
CLN3-211ENST00000564091 ARHGAP18Q8N392 663 aa17.66■□□□□ 0.42
CLN3-211ENST00000564091 FBXL13Q8NEE6 735 aa17.66■□□□□ 0.42
CLN3-211ENST00000564091 DDI1Q8WTU0 396 aa17.66■□□□□ 0.42
CLN3-211ENST00000564091 UCMAQ8WVF2 138 aa17.66■□□□□ 0.42
CLN3-211ENST00000564091 SIPA1Q96FS4 1042 aa17.66■□□□□ 0.42
CLN3-211ENST00000564091 ULBP1Q9BZM6 244 aa17.66■□□□□ 0.42
CLN3-211ENST00000564091 CIPCQ9C0C6 399 aa17.66■□□□□ 0.42
CLN3-211ENST00000564091 MIR1-1HGQ9H1L0 117 aa17.66■□□□□ 0.42
CLN3-211ENST00000564091 DMXL2Q8TDJ6 3036 aa17.65■□□□□ 0.42
CLN3-211ENST00000564091 SRRM3A6NNA2 597 aaPredicted RBP17.65■□□□□ 0.42
CLN3-211ENST00000564091 H0Y626 953 aa17.65■□□□□ 0.42
CLN3-211ENST00000564091 NPC1O15118 1278 aa17.65■□□□□ 0.42
CLN3-211ENST00000564091 TRIM16O95361 564 aa17.65■□□□□ 0.42
CLN3-211ENST00000564091 ZBED1O96006 694 aa17.65■□□□□ 0.42
CLN3-211ENST00000564091 PRKCHP24723 683 aa17.65■□□□□ 0.42
CLN3-211ENST00000564091 TPMTP51580 245 aa17.65■□□□□ 0.42
CLN3-211ENST00000564091 TRIP6Q15654 476 aaKnown RBP17.65■□□□□ 0.42
CLN3-211ENST00000564091 GOLGA7BQ2TAP0 167 aa17.65■□□□□ 0.42
CLN3-211ENST00000564091 ZCCHC9Q8N567 271 aaKnown RBP17.65■□□□□ 0.42
CLN3-211ENST00000564091 TTC39CQ8N584 583 aa17.65■□□□□ 0.42
CLN3-211ENST00000564091 RBBP8NLQ8NC74 664 aaPredicted RBP17.65■□□□□ 0.42
CLN3-211ENST00000564091 DNASE2BQ8WZ79 361 aa17.65■□□□□ 0.42
CLN3-211ENST00000564091 FAXDC2Q96IV6 333 aa17.65■□□□□ 0.42
CLN3-211ENST00000564091 PKD1L2Q7Z442 2459 aa17.64■□□□□ 0.42
CLN3-211ENST00000564091 PCNX2A6NKB5 2137 aa17.64■□□□□ 0.41
CLN3-211ENST00000564091 CETN3O15182 167 aa17.64■□□□□ 0.41
CLN3-211ENST00000564091 TSPAN3O60637 253 aa17.64■□□□□ 0.41
CLN3-211ENST00000564091 ZNF202O95125 648 aa17.64■□□□□ 0.41
CLN3-211ENST00000564091 HLA-EP13747 358 aa17.64■□□□□ 0.41
CLN3-211ENST00000564091 RDXP35241 583 aaKnown RBP17.64■□□□□ 0.41
CLN3-211ENST00000564091 ZNF132P52740 706 aa17.64■□□□□ 0.41
CLN3-211ENST00000564091 COPAP53621 1224 aa17.64■□□□□ 0.41
CLN3-211ENST00000564091 SLC8A3P57103 927 aa17.64■□□□□ 0.41
CLN3-211ENST00000564091 PDE4CQ08493 712 aa17.64■□□□□ 0.41
CLN3-211ENST00000564091 SLC14A1Q13336 389 aa17.64■□□□□ 0.41
CLN3-211ENST00000564091 EDRF1Q3B7T1 1238 aa17.64■□□□□ 0.41
CLN3-211ENST00000564091 CBWD6Q4V339 395 aa17.64■□□□□ 0.41
CLN3-211ENST00000564091 CBWD3Q5JTY5 395 aa17.64■□□□□ 0.41
CLN3-211ENST00000564091 CBWD5Q5RIA9 395 aa17.64■□□□□ 0.41
CLN3-211ENST00000564091 DCAF12L1Q5VU92 463 aa17.64■□□□□ 0.41
CLN3-211ENST00000564091 PM20D1Q6GTS8 502 aa17.64■□□□□ 0.41
CLN3-211ENST00000564091 BHLHA9Q7RTU4 235 aa17.64■□□□□ 0.41
CLN3-211ENST00000564091 FMNL3Q8IVF7 1028 aa17.64■□□□□ 0.41
CLN3-211ENST00000564091 CPXM2Q8N436 756 aa17.64■□□□□ 0.41
CLN3-211ENST00000564091 PNPLA1Q8N8W4 532 aa17.64■□□□□ 0.41
CLN3-211ENST00000564091 PRCCQ92733 491 aaPredicted RBP17.64■□□□□ 0.41
CLN3-211ENST00000564091 SFMBT1Q9UHJ3 866 aa17.64■□□□□ 0.41
CLN3-211ENST00000564091 TSPAN16Q9UKR8 245 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms