RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 DHX58Q96C10 678 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 GIMAP5Q96F15 307 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 ARL5BQ96KC2 179 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 FSD1Q9BTV5 496 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 APOL5Q9BWW9 433 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 REXO4Q9GZR2 422 aaKnown RBP5.43□□□□□ -1.54
VPS35-205ENST00000563984 LMAN2LQ9H0V9 348 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 SMARCAD1Q9H4L7 1026 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 ZWILCHQ9H900 591 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 AATFQ9NY61 560 aaKnown RBP eCLIP5.43□□□□□ -1.54
VPS35-205ENST00000563984 EMC3Q9P0I2 261 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 POLKQ9UBT6 870 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 SAP30BPQ9UHR5 308 aaKnown RBP5.43□□□□□ -1.54
VPS35-205ENST00000563984 PAIP2BQ9ULR5 123 aaKnown RBP5.43□□□□□ -1.54
VPS35-205ENST00000563984 SCAF8Q9UPN6 1271 aaKnown RBP5.43□□□□□ -1.54
VPS35-205ENST00000563984 FPGT-TNNI3KV9GXZ4 949 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 MAPK8IP3Q9UPT6 1336 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 CCDC169A6NNP5 214 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 VSTM5A8MXK1 200 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 F5H423 210 aaPredicted RBP5.42□□□□□ -1.54
VPS35-205ENST00000563984 WNT10BO00744 389 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 B3GALT2O43825 422 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 EXTL3O43909 919 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 USO1O60763 962 aaKnown RBP5.42□□□□□ -1.54
VPS35-205ENST00000563984 GPR32O75388 356 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 NDUFA10O95299 355 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 EPB41P11171 864 aaKnown RBP5.42□□□□□ -1.54
VPS35-205ENST00000563984 SLC16A2P36021 539 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 PHKA1P46020 1223 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 ALDH1A3P47895 512 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 ATP5OP48047 213 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 SULT1E1P49888 294 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 ZNF280AP59817 542 aaPredicted RBP5.42□□□□□ -1.54
VPS35-205ENST00000563984 MRPS15P82914 257 aaKnown RBP5.42□□□□□ -1.54
VPS35-205ENST00000563984 KLHL30Q0D2K2 578 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 UBXN2BQ14CS0 331 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 STK11Q15831 433 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 ASIC2Q16515 512 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 CCDC40Q4G0X9 1142 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 KRBOX4Q5JUW0 171 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 TEX35Q5T0J7 233 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 NEK5Q6P3R8 708 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 C11orf88Q6PI97 169 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 PCSK4Q6UW60 755 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 MED25Q71SY5 747 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 TAOK1Q7L7X3 1001 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 NLRP9Q7RTR0 991 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 SCYL3Q8IZE3 742 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 FAM9CQ8IZT9 166 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 SPARTQ8N0X7 666 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 NAT8LQ8N9F0 302 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 PCSK9Q8NBP7 692 aaKnown RBP5.42□□□□□ -1.54
VPS35-205ENST00000563984 SUPT20HQ8NEM7 779 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 IPMKQ8NFU5 416 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 OR2I1PQ8NGU4 316 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 TRAF3IP1Q8TDR0 691 aaPredicted RBP5.42□□□□□ -1.54
VPS35-205ENST00000563984 NRG4Q8WWG1 115 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 HDAC2Q92769 488 aaKnown RBP5.42□□□□□ -1.54
VPS35-205ENST00000563984 PPP2R3CQ969Q6 453 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 TIFAQ96CG3 184 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 SAAL1Q96ER3 474 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 ISCA1Q9BUE6 129 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 LDAHQ9H6V9 325 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 ACAD9Q9H845 621 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 PRDM11Q9NQV5 511 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 ZMYND8Q9ULU4 1186 aaPredicted RBP5.42□□□□□ -1.54
VPS35-205ENST00000563984 COG5Q9UP83 839 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 ROCK2O75116 1388 aaKnown RBP5.42□□□□□ -1.54
VPS35-205ENST00000563984 PLEKHG2Q9H7P9 1386 aa5.42□□□□□ -1.54
VPS35-205ENST00000563984 PTPRGP23470 1445 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 A0A0G2JPF8 293 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 RSPH10B2B2RC85 870 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 HNRNPCL3B7ZW38 293 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 E9PMD0 336 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 UBXN8O00124 270 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 MASP2O00187 686 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 LSM1O15116 133 aaKnown RBP5.41□□□□□ -1.54
VPS35-205ENST00000563984 TEX28O15482 410 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 RNF113AO15541 343 aaKnown RBP5.41□□□□□ -1.54
VPS35-205ENST00000563984 PRPF3O43395 683 aaKnown RBP5.41□□□□□ -1.54
VPS35-205ENST00000563984 ATP8B1O43520 1251 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 AHCYL1O43865 530 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 LPXNO60711 386 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 DKC1O60832 514 aaKnown RBP eCLIP5.41□□□□□ -1.54
VPS35-205ENST00000563984 SLITRK3O94933 977 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 CAVIN2O95810 425 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 GCP02774 474 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 RSPH10BP0C881 870 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 HNRNPCL4P0DMR1 293 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 PCNAP12004 261 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 CKBP12277 381 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 PHKG2P15735 406 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 ARF4P18085 180 aaPredicted RBP5.41□□□□□ -1.54
VPS35-205ENST00000563984 DDCP20711 480 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 FPR1P21462 350 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 GCKP35557 465 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 CCT6AP40227 531 aaKnown RBP5.41□□□□□ -1.54
VPS35-205ENST00000563984 IARSP41252 1262 aaKnown RBP5.41□□□□□ -1.54
VPS35-205ENST00000563984 TM4SF4P48230 202 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 MRPL12P52815 198 aaKnown RBP5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms