RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 LRRC4Q9HBW1 653 aa18.02■□□□□ 0.48
VPS9D1-203ENST00000563798 TMEM9BQ9NQ34 198 aa18.02■□□□□ 0.48
VPS9D1-203ENST00000563798 CNGB3Q9NQW8 809 aa18.02■□□□□ 0.48
VPS9D1-203ENST00000563798 TMEM74BQ9NUR3 256 aa18.02■□□□□ 0.48
VPS9D1-203ENST00000563798 PLK2Q9NYY3 685 aa18.02■□□□□ 0.48
VPS9D1-203ENST00000563798 THAP10Q9P2Z0 257 aaPredicted RBP18.02■□□□□ 0.48
VPS9D1-203ENST00000563798 TPRP12270 2363 aaKnown RBP18.01■□□□□ 0.47
VPS9D1-203ENST00000563798 IGHV1OR15-9A0A0B4J2B8 117 aa18.01■□□□□ 0.47
VPS9D1-203ENST00000563798 SLC12A8A0AV02 714 aa18.01■□□□□ 0.47
VPS9D1-203ENST00000563798 LATS1O95835 1130 aa18.01■□□□□ 0.47
VPS9D1-203ENST00000563798 HMBSP08397 361 aa18.01■□□□□ 0.47
VPS9D1-203ENST00000563798 CD19P15391 556 aa18.01■□□□□ 0.47
VPS9D1-203ENST00000563798 MORC3Q14149 939 aa18.01■□□□□ 0.47
VPS9D1-203ENST00000563798 EIF4HQ15056 248 aaKnown RBP18.01■□□□□ 0.47
VPS9D1-203ENST00000563798 CNGA2Q16280 664 aa18.01■□□□□ 0.47
VPS9D1-203ENST00000563798 BSPRYQ5W0U4 402 aa18.01■□□□□ 0.47
VPS9D1-203ENST00000563798 SLC35F5Q8WV83 523 aa18.01■□□□□ 0.47
VPS9D1-203ENST00000563798 TFAP2BQ92481 460 aa18.01■□□□□ 0.47
VPS9D1-203ENST00000563798 BHMTQ93088 406 aa18.01■□□□□ 0.47
VPS9D1-203ENST00000563798 MRGPRX1Q96LB2 322 aa18.01■□□□□ 0.47
VPS9D1-203ENST00000563798 NT5C1BQ96P26 610 aa18.01■□□□□ 0.47
VPS9D1-203ENST00000563798 ABCC13Q9NSE7 274 aa18.01■□□□□ 0.47
VPS9D1-203ENST00000563798 CACNA2D2Q9NY47 1150 aa18.01■□□□□ 0.47
VPS9D1-203ENST00000563798 BICDL2A1A5D9 508 aa18■□□□□ 0.47
VPS9D1-203ENST00000563798 YJEFN3A6XGL0 299 aa18■□□□□ 0.47
VPS9D1-203ENST00000563798 E7ENQ6 273 aa18■□□□□ 0.47
VPS9D1-203ENST00000563798 CYBBP04839 570 aa18■□□□□ 0.47
VPS9D1-203ENST00000563798 CSRP1P21291 193 aaKnown RBP18■□□□□ 0.47
VPS9D1-203ENST00000563798 MARSP56192 900 aaKnown RBP18■□□□□ 0.47
VPS9D1-203ENST00000563798 ZNF445P59923 1031 aa18■□□□□ 0.47
VPS9D1-203ENST00000563798 GCNT1Q02742 428 aa18■□□□□ 0.47
VPS9D1-203ENST00000563798 RPL6Q02878 288 aaKnown RBP18■□□□□ 0.47
VPS9D1-203ENST00000563798 ADIGQ0VDE8 80 aa18■□□□□ 0.47
VPS9D1-203ENST00000563798 CETN1Q12798 172 aa18■□□□□ 0.47
VPS9D1-203ENST00000563798 LRMPQ12912 555 aa18■□□□□ 0.47
VPS9D1-203ENST00000563798 STILQ15468 1287 aa18■□□□□ 0.47
VPS9D1-203ENST00000563798 GEN1Q17RS7 908 aa18■□□□□ 0.47
VPS9D1-203ENST00000563798 TRIM61Q5EBN2 209 aa18■□□□□ 0.47
VPS9D1-203ENST00000563798 TMEM270Q6UE05 265 aa18■□□□□ 0.47
VPS9D1-203ENST00000563798 FMNL3Q8IVF7 1028 aa18■□□□□ 0.47
VPS9D1-203ENST00000563798 CEP76Q8TAP6 659 aa18■□□□□ 0.47
VPS9D1-203ENST00000563798 UBA3Q8TBC4 463 aa18■□□□□ 0.47
VPS9D1-203ENST00000563798 IRGQQ8WZA9 623 aa18■□□□□ 0.47
VPS9D1-203ENST00000563798 NDRG1Q92597 394 aaKnown RBP18■□□□□ 0.47
VPS9D1-203ENST00000563798 IPO9Q96P70 1041 aaKnown RBP18■□□□□ 0.47
VPS9D1-203ENST00000563798 NUSAP1Q9BXS6 441 aaKnown RBP18■□□□□ 0.47
VPS9D1-203ENST00000563798 IRX2Q9BZI1 471 aaPredicted RBP18■□□□□ 0.47
VPS9D1-203ENST00000563798 CIZ1Q9ULV3 898 aaPredicted RBP18■□□□□ 0.47
VPS9D1-203ENST00000563798 STON1Q9Y6Q2 735 aa18■□□□□ 0.47
VPS9D1-203ENST00000563798 EPG5Q9HCE0 2579 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 WASH3PC4AMC7 463 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 RNF225M0QZC1 329 aaPredicted RBP17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 TIMM44O43615 452 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 GABBR2O75899 941 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 C7P10643 843 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 ITPKAP23677 461 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 HARS2P49590 506 aaKnown RBP17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 DAOAP59103 153 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 ZNF33AQ06730 810 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 CCDC40Q4G0X9 1142 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 MPPE1Q53F39 396 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 ISM2Q6H9L7 571 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 MSANTD2Q6P1R3 559 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 ANKS1BQ7Z6G8 1248 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 RABEPKQ7Z6M1 372 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 TRIM59Q8IWR1 403 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 SIX6OS1Q8N1H7 587 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 RNF139Q8WU17 664 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 UCMAQ8WVF2 138 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 ZNF419Q96HQ0 510 aaPredicted RBP17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 HSFY1Q96LI6 401 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 ZSWIM1Q9BR11 485 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 ELOVL2Q9NXB9 296 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 ANGPTL2Q9UKU9 493 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 CLEC4EQ9ULY5 219 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 CNTN6Q9UQ52 1028 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 RAD54BQ9Y620 910 aa17.99■□□□□ 0.47
VPS9D1-203ENST00000563798 GNA14O95837 355 aa17.98■□□□□ 0.47
VPS9D1-203ENST00000563798 CEACAM1P13688 526 aa17.98■□□□□ 0.47
VPS9D1-203ENST00000563798 STARD3Q14849 445 aa17.98■□□□□ 0.47
VPS9D1-203ENST00000563798 DUOXA1Q1HG43 343 aa17.98■□□□□ 0.47
VPS9D1-203ENST00000563798 PMF1Q6P1K2 205 aa17.98■□□□□ 0.47
VPS9D1-203ENST00000563798 ARMCX6Q7L4S7 300 aa17.98■□□□□ 0.47
VPS9D1-203ENST00000563798 PPM1KQ8N3J5 372 aa17.98■□□□□ 0.47
VPS9D1-203ENST00000563798 EHBP1Q8NDI1 1231 aa17.98■□□□□ 0.47
VPS9D1-203ENST00000563798 DDI1Q8WTU0 396 aa17.98■□□□□ 0.47
VPS9D1-203ENST00000563798 NELFBQ8WX92 580 aa17.98■□□□□ 0.47
VPS9D1-203ENST00000563798 CAPN10Q9HC96 672 aa17.98■□□□□ 0.47
VPS9D1-203ENST00000563798 SLC6A14Q9UN76 642 aa17.98■□□□□ 0.47
VPS9D1-203ENST00000563798 PCDHB4Q9Y5E5 795 aa17.98■□□□□ 0.47
VPS9D1-203ENST00000563798 UPK3BL1B0FP48 263 aa17.97■□□□□ 0.47
VPS9D1-203ENST00000563798 UPK3BL2E5RIL1 263 aa17.97■□□□□ 0.47
VPS9D1-203ENST00000563798 IGLV3-27P01718 113 aa17.97■□□□□ 0.47
VPS9D1-203ENST00000563798 SERPINF2P08697 491 aa17.97■□□□□ 0.47
VPS9D1-203ENST00000563798 ENGP17813 658 aa17.97■□□□□ 0.47
VPS9D1-203ENST00000563798 HOXD9P28356 352 aaPredicted RBP17.97■□□□□ 0.47
VPS9D1-203ENST00000563798 IL12RB1P42701 662 aa17.97■□□□□ 0.47
VPS9D1-203ENST00000563798 RPL34P49207 117 aaKnown RBP17.97■□□□□ 0.47
VPS9D1-203ENST00000563798 NOVA1P51513 510 aaKnown RBP17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms