RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 SLC1A6P48664 564 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 ACSBG2Q5FVE4 666 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 OR52E8Q6IFG1 317 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 FOXR2Q6PJQ5 311 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 LAYNQ6UX15 382 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 EID3Q8N140 333 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 KIFC1Q9BW19 673 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 ZBTB3Q9H5J0 574 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 CHMP1AQ9HD42 196 aaPredicted RBP6.43□□□□□ -1.38
CLK3-212ENST00000563418 N6AMT1Q9Y5N5 214 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 RBAK-RBAKDNI3L0D1 243 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 CTDNEP1O95476 244 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 ADD2P35612 726 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 MKRN4PQ13434 485 aaPredicted RBP6.42□□□□□ -1.38
CLK3-212ENST00000563418 PIGHQ14442 188 aaPredicted RBP6.42□□□□□ -1.38
CLK3-212ENST00000563418 PPP2R2DQ66LE6 453 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 MCUQ8NE86 351 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 TBRG4Q969Z0 631 aaKnown RBP eCLIP6.42□□□□□ -1.38
CLK3-212ENST00000563418 EDC3Q96F86 508 aaKnown RBP6.42□□□□□ -1.38
CLK3-212ENST00000563418 INPP4AQ96PE3 977 aaPredicted RBP6.42□□□□□ -1.38
CLK3-212ENST00000563418 PEX2P28328 305 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 CASP1P29466 404 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 C6orf52Q5T4I8 152 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 VWA5B1Q5TIE3 1220 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 PLET1Q6UQ28 207 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 ZDHHC13Q8IUH4 622 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 GALNT12Q8IXK2 581 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 MYO1HQ8N1T3 1032 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 GPKOWQ92917 476 aaPredicted RBP eCLIP6.42□□□□□ -1.38
CLK3-212ENST00000563418 NACC1Q96RE7 527 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 IMPAD1Q9NX62 359 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 NINJ2Q9NZG7 142 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 SLAIN2Q9P270 581 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 WNT7AO00755 349 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 KIAA0391O15091 583 aaKnown RBP6.42□□□□□ -1.38
CLK3-212ENST00000563418 NCAM2O15394 837 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 CASP4P49662 377 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 PGDP52209 483 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 TNK2Q07912 1038 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 TIGD7Q6NT04 549 aaPredicted RBP6.42□□□□□ -1.38
CLK3-212ENST00000563418 NT5DC3Q86UY8 548 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 HACE1Q8IYU2 909 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 RASGEF1CQ8N431 466 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 MARVELD2Q8N4S9 558 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 ATP6V1E2Q96A05 226 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 CDRT15Q96T59 188 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 SERHL2Q9H4I8 314 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 PSTPIP2Q9H939 334 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 BFARQ9NZS9 450 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 SYNCRIPO60506 623 aaKnown RBP6.42□□□□□ -1.38
CLK3-212ENST00000563418 FBXO21O94952 628 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 RARBP10826 455 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 RPA3P35244 121 aaPredicted RBP6.42□□□□□ -1.38
CLK3-212ENST00000563418 TGFBR2P37173 567 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 YAP1P46937 504 aaKnown RBP6.42□□□□□ -1.38
CLK3-212ENST00000563418 EIF4A1P60842 406 aaKnown RBP6.42□□□□□ -1.38
CLK3-212ENST00000563418 TXNDC11Q6PKC3 985 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 POLNQ7Z5Q5 900 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 GALNT7Q86SF2 657 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 RDH13Q8NBN7 331 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 TCEAL3Q969E4 200 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 ZNF560Q96MR9 790 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 TCEAL7Q9BRU2 100 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 DDX43Q9NXZ2 648 aaKnown RBP6.42□□□□□ -1.38
CLK3-212ENST00000563418 C3orf18Q9UK00 162 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 COX4I1P13073 169 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 OR2B6P58173 313 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 ST3GAL1Q11201 340 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 ASPRV1Q53RT3 343 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 FETUBQ9UGM5 382 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 PSME2Q9UL46 239 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 PBRM1Q86U86 1689 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 ITM2AO43736 263 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 ABATP80404 500 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 NCOA4Q13772 614 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 PLCL1Q15111 1095 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 CDCA5Q96FF9 252 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 ARL5BQ96KC2 179 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 SLC4A5Q9BY07 1137 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 PIDD1Q9HB75 910 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 PCDH9Q9HC56 1237 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 SIK3Q9Y2K2 1263 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 hCG_1642624A0A1W2PR95 340 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 LGR5O75473 907 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 ADRA1DP25100 572 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 HMGB2P26583 209 aaKnown RBP6.42□□□□□ -1.38
CLK3-212ENST00000563418 QARSP47897 775 aaKnown RBP6.42□□□□□ -1.38
CLK3-212ENST00000563418 DGKDQ16760 1214 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 MZT2AQ6P582 158 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 EXD1Q8NHP7 514 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 ERMAPQ96PL5 475 aaPredicted RBP6.42□□□□□ -1.38
CLK3-212ENST00000563418 ZNF347Q96SE7 839 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 ZSCAN5AQ9BUG6 496 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 TMOD3Q9NYL9 352 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 STOX2Q9P2F5 926 aaPredicted RBP6.42□□□□□ -1.38
CLK3-212ENST00000563418 SEPT9Q9UHD8 586 aaPredicted RBP6.42□□□□□ -1.38
CLK3-212ENST00000563418 TFR2Q9UP52 801 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 NEMP1O14524 444 aa6.42□□□□□ -1.38
CLK3-212ENST00000563418 DENRO43583 198 aaKnown RBP6.42□□□□□ -1.38
CLK3-212ENST00000563418 IFNA14P01570 189 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms