RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 PSMB10P40306 273 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 KCNJ5P48544 419 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 ARFIP1P53367 373 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 YWHAHQ04917 246 aaPredicted RBP5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 FSTL1Q12841 308 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 MYO1EQ12965 1108 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 IRF3Q14653 427 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 NOLC1Q14978 699 aaKnown RBP eCLIP5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 NFIL3Q16649 462 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 ERMARDQ5T6L9 678 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 PRAMEF18Q5VWM3 479 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 C11orf88Q6PI97 169 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 SLC30A9Q6PML9 568 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 FAM90A1Q86YD7 464 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 CCDC28AQ8IWP9 274 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 SCN4BQ8IWT1 228 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 MPP5Q8N3R9 675 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 ZNF655Q8N720 491 aaPredicted RBP5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 FRMD1Q8N878 549 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 MIGA1Q8NAN2 632 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 DAGLBQ8NCG7 672 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 HIPK4Q8NE63 616 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 CCHCR1Q8TD31 782 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 SMCR8Q8TEV9 937 aaPredicted RBP5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 PIGBQ92521 554 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 HSPH1Q92598 858 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 HOXB13Q92826 284 aaPredicted RBP5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 CNDP1Q96KN2 507 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 GBP5Q96PP8 586 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 FUZQ9BT04 418 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 PHF7Q9BWX1 381 aaPredicted RBP5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 ZNF518BQ9C0D4 1074 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 TTYH1Q9H313 450 aaPredicted RBP5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 WDCPQ9H6R7 721 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 TAS2R10Q9NYW0 307 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 CALCOCO1Q9P1Z2 691 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 ZNF624Q9P2J8 865 aaPredicted RBP5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 UBA2Q9UBT2 640 aaPredicted RBP5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 MED16Q9Y2X0 877 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 ABCA3Q99758 1704 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 RGS12O14924 1447 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 PALLDQ8WX93 1383 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 C22orf46C9J442 243 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 F2RL2O00254 374 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 TNPO2O14787 897 aaKnown RBP5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 ASAP2O43150 1006 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 CYP26A1O43174 497 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 KLHL41O60662 606 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 MATN4O95460 622 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 CBX7O95931 251 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 SYPP08247 313 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 TMIGD3P0DMS9 266 aaPredicted RBP5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 LAG3P18627 525 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 PSMA4P25789 261 aaKnown RBP5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 ICAM3P32942 547 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 RFC1P35251 1148 aaPredicted RBP5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 PSMC2P35998 433 aaKnown RBP5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 SLC26A5P58743 744 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 COX10Q12887 443 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 PDCLQ13371 301 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 TNFAIP1Q13829 316 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 TRIM71Q2Q1W2 868 aaKnown RBP5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 CYP27C1Q4G0S4 372 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 TCP11X2Q5H9J9 407 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 MPP7Q5T2T1 576 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 TTC22Q5TAA0 569 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 DCAF12L1Q5VU92 463 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 ADALQ6DHV7 355 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 SLFN12LQ6IEE8 588 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 CYP20A1Q6UW02 462 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 SUSD1Q6UWL2 747 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 CRELD2Q6UXH1 353 aaPredicted RBP5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 GADL1Q6ZQY3 521 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 LRRC8DQ7L1W4 858 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 METTL23Q86XA0 190 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 LURAP1LQ8IV03 231 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 Q8N1Y9 231 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 ZGPATQ8N5A5 531 aaKnown RBP5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 SCFD2Q8WU76 684 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 ZFAND2BQ8WV99 257 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 ZNF653Q96CK0 615 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 VPS39Q96JC1 886 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 RBM15Q96T37 977 aaKnown RBP eCLIP5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 FUT8Q9BYC5 575 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 FAM129AQ9BZQ8 928 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 NELFAQ9H3P2 528 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 MTG2Q9H4K7 406 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 NRIP3Q9NQ35 241 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 HEYLQ9NQ87 328 aaPredicted RBP5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 PAPOLBQ9NRJ5 636 aaKnown RBP5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 SNTG1Q9NSN8 517 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 CTNNA3Q9UI47 895 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 ANGEL1Q9UNK9 670 aaKnown RBP5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 AP1M2Q9Y6Q5 423 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 X6R8D5 127 aa5.53□□□□□ -1.52
VPS35P1-201ENST00000563400 COL18A1P39060 1754 aa5.52□□□□□ -1.53
VPS35P1-201ENST00000563400 TP73O15350 636 aa5.52□□□□□ -1.53
VPS35P1-201ENST00000563400 NPHS1O60500 1241 aa5.52□□□□□ -1.53
VPS35P1-201ENST00000563400 FKTNO75072 461 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms