RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 TXNRD3NBQ6F5E7 133 aa17.26■□□□□ 0.35
VPS4A-202ENST00000562754 CC2D1AQ6P1N0 951 aaPredicted RBP17.26■□□□□ 0.35
VPS4A-202ENST00000562754 CMTM8Q8IZV2 173 aa17.26■□□□□ 0.35
VPS4A-202ENST00000562754 FGF13Q92913 245 aa17.26■□□□□ 0.35
VPS4A-202ENST00000562754 MYADMQ96S97 322 aa17.26■□□□□ 0.35
VPS4A-202ENST00000562754 ANLNQ9NQW6 1124 aa17.26■□□□□ 0.35
VPS4A-202ENST00000562754 GKN1Q9NS71 199 aa17.26■□□□□ 0.35
VPS4A-202ENST00000562754 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.26■□□□□ 0.35
VPS4A-202ENST00000562754 TLR6Q9Y2C9 796 aa17.26■□□□□ 0.35
VPS4A-202ENST00000562754 HBS1LQ9Y450 684 aaKnown RBP17.26■□□□□ 0.35
VPS4A-202ENST00000562754 I6L893 689 aaPredicted RBP17.25■□□□□ 0.35
VPS4A-202ENST00000562754 MBTPS2O43462 519 aa17.25■□□□□ 0.35
VPS4A-202ENST00000562754 SPOPO43791 374 aa17.25■□□□□ 0.35
VPS4A-202ENST00000562754 RNF8O76064 485 aa17.25■□□□□ 0.35
VPS4A-202ENST00000562754 F9P00740 461 aa17.25■□□□□ 0.35
VPS4A-202ENST00000562754 HMBSP08397 361 aa17.25■□□□□ 0.35
VPS4A-202ENST00000562754 GBP1P32455 592 aa17.25■□□□□ 0.35
VPS4A-202ENST00000562754 SLC1A1P43005 524 aa17.25■□□□□ 0.35
VPS4A-202ENST00000562754 KCNQ1P51787 676 aa17.25■□□□□ 0.35
VPS4A-202ENST00000562754 ZC3H12AQ5D1E8 599 aaKnown RBP17.25■□□□□ 0.35
VPS4A-202ENST00000562754 NT5DC3Q86UY8 548 aa17.25■□□□□ 0.35
VPS4A-202ENST00000562754 SLC35F6Q8N357 371 aa17.25■□□□□ 0.35
VPS4A-202ENST00000562754 CCDC185Q8N715 623 aa17.25■□□□□ 0.35
VPS4A-202ENST00000562754 TRIM58Q8NG06 486 aa17.25■□□□□ 0.35
VPS4A-202ENST00000562754 MAFAQ8NHW3 353 aaPredicted RBP17.25■□□□□ 0.35
VPS4A-202ENST00000562754 RIN3Q8TB24 985 aa17.25■□□□□ 0.35
VPS4A-202ENST00000562754 USP13Q92995 863 aaPredicted RBP17.25■□□□□ 0.35
VPS4A-202ENST00000562754 CD101Q93033 1021 aa17.25■□□□□ 0.35
VPS4A-202ENST00000562754 HLA-CQ95604 372 aa17.25■□□□□ 0.35
VPS4A-202ENST00000562754 NECTIN4Q96NY8 510 aa17.25■□□□□ 0.35
VPS4A-202ENST00000562754 ALS2CR12Q96Q35 445 aa17.25■□□□□ 0.35
VPS4A-202ENST00000562754 TMPRSS4Q9NRS4 437 aa17.25■□□□□ 0.35
VPS4A-202ENST00000562754 PCSK1NQ9UHG2 260 aa17.25■□□□□ 0.35
VPS4A-202ENST00000562754 ZMYM5Q9UJ78 669 aa17.25■□□□□ 0.35
VPS4A-202ENST00000562754 CDH7Q9ULB5 785 aa17.25■□□□□ 0.35
VPS4A-202ENST00000562754 ARHGAP26Q9UNA1 814 aa17.25■□□□□ 0.35
VPS4A-202ENST00000562754 CCL26Q9Y258 94 aa17.25■□□□□ 0.35
VPS4A-202ENST00000562754 KIF5CO60282 957 aa17.24■□□□□ 0.35
VPS4A-202ENST00000562754 STC2O76061 302 aa17.24■□□□□ 0.35
VPS4A-202ENST00000562754 IRF1P10914 325 aa17.24■□□□□ 0.35
VPS4A-202ENST00000562754 DESP17661 470 aa17.24■□□□□ 0.35
VPS4A-202ENST00000562754 AVPR1AP37288 418 aa17.24■□□□□ 0.35
VPS4A-202ENST00000562754 MARCKSL1P49006 195 aa17.24■□□□□ 0.35
VPS4A-202ENST00000562754 RING1Q06587 406 aa17.24■□□□□ 0.35
VPS4A-202ENST00000562754 PPP2R5DQ14738 602 aa17.24■□□□□ 0.35
VPS4A-202ENST00000562754 ZNF569Q5MCW4 686 aa17.24■□□□□ 0.35
VPS4A-202ENST00000562754 SCYL2Q6P3W7 929 aa17.24■□□□□ 0.35
VPS4A-202ENST00000562754 SYCE1Q8N0S2 351 aa17.24■□□□□ 0.35
VPS4A-202ENST00000562754 ZSCAN18Q8TBC5 510 aaPredicted RBP17.24■□□□□ 0.35
VPS4A-202ENST00000562754 GPATCH2LQ9NWQ4 482 aa17.24■□□□□ 0.35
VPS4A-202ENST00000562754 USP18Q9UMW8 372 aa17.24■□□□□ 0.35
VPS4A-202ENST00000562754 PACSIN2Q9UNF0 486 aaPredicted RBP17.24■□□□□ 0.35
VPS4A-202ENST00000562754 KIF26AQ9ULI4 1882 aaPredicted RBP17.24■□□□□ 0.35
VPS4A-202ENST00000562754 KCNU1A8MYU2 1149 aa17.23■□□□□ 0.35
VPS4A-202ENST00000562754 FANCGO15287 622 aa17.23■□□□□ 0.35
VPS4A-202ENST00000562754 GREM1O60565 184 aa17.23■□□□□ 0.35
VPS4A-202ENST00000562754 WEE1P30291 646 aa17.23■□□□□ 0.35
VPS4A-202ENST00000562754 GJC1P36383 396 aa17.23■□□□□ 0.35
VPS4A-202ENST00000562754 SSR1P43307 286 aaKnown RBP17.23■□□□□ 0.35
VPS4A-202ENST00000562754 KPNA1P52294 538 aaPredicted RBP17.23■□□□□ 0.35
VPS4A-202ENST00000562754 COG7P83436 770 aa17.23■□□□□ 0.35
VPS4A-202ENST00000562754 USP4Q13107 963 aa17.23■□□□□ 0.35
VPS4A-202ENST00000562754 FAM78AQ5JUQ0 283 aa17.23■□□□□ 0.35
VPS4A-202ENST00000562754 BRMS1LQ5PSV4 323 aa17.23■□□□□ 0.35
VPS4A-202ENST00000562754 NYAP1Q6ZVC0 841 aa17.23■□□□□ 0.35
VPS4A-202ENST00000562754 SND1Q7KZF4 910 aaKnown RBP eCLIP17.23■□□□□ 0.35
VPS4A-202ENST00000562754 PEX26Q7Z412 305 aa17.23■□□□□ 0.35
VPS4A-202ENST00000562754 ARID3BQ8IVW6 561 aaPredicted RBP17.23■□□□□ 0.35
VPS4A-202ENST00000562754 KRT35Q92764 455 aa17.23■□□□□ 0.35
VPS4A-202ENST00000562754 NTAN1Q96AB6 310 aa17.23■□□□□ 0.35
VPS4A-202ENST00000562754 PLD4Q96BZ4 506 aa17.23■□□□□ 0.35
VPS4A-202ENST00000562754 ACSF2Q96CM8 615 aaPredicted RBP17.23■□□□□ 0.35
VPS4A-202ENST00000562754 RSPRY1Q96DX4 576 aa17.23■□□□□ 0.35
VPS4A-202ENST00000562754 ASB16Q96NS5 453 aa17.23■□□□□ 0.35
VPS4A-202ENST00000562754 WDR24Q96S15 920 aa17.23■□□□□ 0.35
VPS4A-202ENST00000562754 NCAPGQ9BPX3 1015 aa17.23■□□□□ 0.35
VPS4A-202ENST00000562754 SNRNP25Q9BV90 132 aaKnown RBP17.23■□□□□ 0.35
VPS4A-202ENST00000562754 ZWILCHQ9H900 591 aa17.23■□□□□ 0.35
VPS4A-202ENST00000562754 PRDM6Q9NQX0 595 aa17.23■□□□□ 0.35
VPS4A-202ENST00000562754 ARHGEF38Q9NXL2 777 aa17.23■□□□□ 0.35
VPS4A-202ENST00000562754 GDE1Q9NZC3 331 aa17.23■□□□□ 0.35
VPS4A-202ENST00000562754 CFAP97Q9P2B7 532 aa17.23■□□□□ 0.35
VPS4A-202ENST00000562754 XPO7Q9UIA9 1087 aaKnown RBP17.23■□□□□ 0.35
VPS4A-202ENST00000562754 LEFTY2O00292 366 aa17.22■□□□□ 0.35
VPS4A-202ENST00000562754 SCAMP3O14828 347 aaKnown RBP17.22■□□□□ 0.35
VPS4A-202ENST00000562754 PRPSAP2O60256 369 aa17.22■□□□□ 0.35
VPS4A-202ENST00000562754 MOCS2O96007 188 aaPredicted RBP17.22■□□□□ 0.35
VPS4A-202ENST00000562754 APOEP02649 317 aa17.22■□□□□ 0.35
VPS4A-202ENST00000562754 KLKB1P03952 638 aa17.22■□□□□ 0.35
VPS4A-202ENST00000562754 TNNT1P13805 278 aa17.22■□□□□ 0.35
VPS4A-202ENST00000562754 FCARP24071 287 aa17.22■□□□□ 0.35
VPS4A-202ENST00000562754 CTNNA2P26232 953 aa17.22■□□□□ 0.35
VPS4A-202ENST00000562754 CCR1P32246 355 aa17.22■□□□□ 0.35
VPS4A-202ENST00000562754 GBP2P32456 591 aaPredicted RBP17.22■□□□□ 0.35
VPS4A-202ENST00000562754 GNG11P61952 73 aa17.22■□□□□ 0.35
VPS4A-202ENST00000562754 ZNF77Q15935 545 aa17.22■□□□□ 0.35
VPS4A-202ENST00000562754 SMTNL2Q2TAL5 461 aa17.22■□□□□ 0.35
VPS4A-202ENST00000562754 LEXMQ3ZCV2 418 aa17.22■□□□□ 0.35
VPS4A-202ENST00000562754 ATP13A4Q4VNC1 1196 aa17.22■□□□□ 0.35
VPS4A-202ENST00000562754 SH3RF2Q8TEC5 729 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms