RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 HOXB2P14652 356 aa16.7■□□□□ 0.26
LMX1B-204ENST00000561065 GABRG2P18507 467 aa16.7■□□□□ 0.26
LMX1B-204ENST00000561065 TRIP4Q15650 581 aaPredicted RBP16.7■□□□□ 0.26
LMX1B-204ENST00000561065 MAP7D1Q3KQU3 841 aa16.7■□□□□ 0.26
LMX1B-204ENST00000561065 AASDHQ4L235 1098 aaPredicted RBP16.7■□□□□ 0.26
LMX1B-204ENST00000561065 USP39Q53GS9 565 aaKnown RBP16.7■□□□□ 0.26
LMX1B-204ENST00000561065 BSPRYQ5W0U4 402 aa16.7■□□□□ 0.26
LMX1B-204ENST00000561065 KIAA1211LQ6NV74 962 aa16.7■□□□□ 0.26
LMX1B-204ENST00000561065 FMNL3Q8IVF7 1028 aa16.7■□□□□ 0.26
LMX1B-204ENST00000561065 KCNV2Q8TDN2 545 aa16.7■□□□□ 0.26
LMX1B-204ENST00000561065 POLMQ9NP87 494 aaPredicted RBP16.7■□□□□ 0.26
LMX1B-204ENST00000561065 SFMBT1Q9UHJ3 866 aa16.7■□□□□ 0.26
LMX1B-204ENST00000561065 GFRA2O00451 464 aa16.69■□□□□ 0.26
LMX1B-204ENST00000561065 ALDH1A2O94788 518 aa16.69■□□□□ 0.26
LMX1B-204ENST00000561065 RHOBTB1O94844 696 aa16.69■□□□□ 0.26
LMX1B-204ENST00000561065 SDHBP21912 280 aa16.69■□□□□ 0.26
LMX1B-204ENST00000561065 NTSR1P30989 418 aa16.69■□□□□ 0.26
LMX1B-204ENST00000561065 MFAP3P55082 362 aa16.69■□□□□ 0.26
LMX1B-204ENST00000561065 APBA1Q02410 837 aa16.69■□□□□ 0.26
LMX1B-204ENST00000561065 CREB5Q02930 508 aa16.69■□□□□ 0.26
LMX1B-204ENST00000561065 CNGA2Q16280 664 aa16.69■□□□□ 0.26
LMX1B-204ENST00000561065 GEN1Q17RS7 908 aa16.69■□□□□ 0.26
LMX1B-204ENST00000561065 PREPLQ4J6C6 727 aaPredicted RBP16.69■□□□□ 0.26
LMX1B-204ENST00000561065 GJB7Q6PEY0 223 aa16.69■□□□□ 0.26
LMX1B-204ENST00000561065 GBP6Q6ZN66 633 aa16.69■□□□□ 0.26
LMX1B-204ENST00000561065 IRF2BP1Q8IU81 584 aa16.69■□□□□ 0.26
LMX1B-204ENST00000561065 SIX6OS1Q8N1H7 587 aa16.69■□□□□ 0.26
LMX1B-204ENST00000561065 SCML4Q8N228 414 aa16.69■□□□□ 0.26
LMX1B-204ENST00000561065 PLD4Q96BZ4 506 aa16.69■□□□□ 0.26
LMX1B-204ENST00000561065 GABRG3Q99928 467 aa16.69■□□□□ 0.26
LMX1B-204ENST00000561065 CD93Q9NPY3 652 aa16.69■□□□□ 0.26
LMX1B-204ENST00000561065 CNGB3Q9NQW8 809 aa16.69■□□□□ 0.26
LMX1B-204ENST00000561065 CACNA2D2Q9NY47 1150 aa16.69■□□□□ 0.26
LMX1B-204ENST00000561065 BCCIPQ9P287 314 aaKnown RBP eCLIP16.69■□□□□ 0.26
LMX1B-204ENST00000561065 STRIP2Q9ULQ0 834 aa16.69■□□□□ 0.26
LMX1B-204ENST00000561065 CNTN6Q9UQ52 1028 aa16.69■□□□□ 0.26
LMX1B-204ENST00000561065 ZNF510Q9Y2H8 683 aa16.69■□□□□ 0.26
LMX1B-204ENST00000561065 RAD54BQ9Y620 910 aa16.69■□□□□ 0.26
LMX1B-204ENST00000561065 MSANTD2Q6P1R3 559 aa16.68■□□□□ 0.26
LMX1B-204ENST00000561065 TRMT11Q7Z4G4 463 aaKnown RBP16.68■□□□□ 0.26
LMX1B-204ENST00000561065 CHPFQ8IZ52 775 aa16.68■□□□□ 0.26
LMX1B-204ENST00000561065 CPXM2Q8N436 756 aa16.68■□□□□ 0.26
LMX1B-204ENST00000561065 C12orf50Q8NA57 414 aaPredicted RBP16.68■□□□□ 0.26
LMX1B-204ENST00000561065 DCLK3Q9C098 648 aa16.68■□□□□ 0.26
LMX1B-204ENST00000561065 SLC6A17Q9H1V8 727 aa16.68■□□□□ 0.26
LMX1B-204ENST00000561065 ACP6Q9NPH0 428 aa16.68■□□□□ 0.26
LMX1B-204ENST00000561065 VPS45Q9NRW7 570 aa16.68■□□□□ 0.26
LMX1B-204ENST00000561065 OLA1Q9NTK5 396 aaKnown RBP16.68■□□□□ 0.26
LMX1B-204ENST00000561065 ANO10Q9NW15 660 aa16.68■□□□□ 0.26
LMX1B-204ENST00000561065 CALCOCO1Q9P1Z2 691 aa16.68■□□□□ 0.26
LMX1B-204ENST00000561065 SLC27A6Q9Y2P4 619 aa16.68■□□□□ 0.26
LMX1B-204ENST00000561065 CNOT1A5YKK6 2376 aaKnown RBP16.68■□□□□ 0.26
LMX1B-204ENST00000561065 GTPBP10A4D1E9 387 aaKnown RBP16.67■□□□□ 0.26
LMX1B-204ENST00000561065 PATE3B3GLJ2 98 aa16.67■□□□□ 0.26
LMX1B-204ENST00000561065 WASH3PC4AMC7 463 aa16.67■□□□□ 0.26
LMX1B-204ENST00000561065 NDUFV2P19404 249 aa16.67■□□□□ 0.26
LMX1B-204ENST00000561065 HOXD9P28356 352 aaPredicted RBP16.67■□□□□ 0.26
LMX1B-204ENST00000561065 CHKAP35790 457 aa16.67■□□□□ 0.26
LMX1B-204ENST00000561065 SGSHP51688 502 aa16.67■□□□□ 0.26
LMX1B-204ENST00000561065 LIMK1P53667 647 aa16.67■□□□□ 0.26
LMX1B-204ENST00000561065 ARMCX6Q7L4S7 300 aa16.67■□□□□ 0.26
LMX1B-204ENST00000561065 C11orf74Q86VG3 221 aa16.67■□□□□ 0.26
LMX1B-204ENST00000561065 ANKRD20A12PQ8NF67 263 aa16.67■□□□□ 0.26
LMX1B-204ENST00000561065 IPO4Q8TEX9 1081 aaKnown RBP16.67■□□□□ 0.26
LMX1B-204ENST00000561065 PIWIL1Q96J94 861 aaKnown RBP16.67■□□□□ 0.26
LMX1B-204ENST00000561065 CRACR2AQ9BSW2 395 aa16.67■□□□□ 0.26
LMX1B-204ENST00000561065 HBS1LQ9Y450 684 aaKnown RBP16.67■□□□□ 0.26
LMX1B-204ENST00000561065 GON4LQ3T8J9 2241 aa16.66■□□□□ 0.26
LMX1B-204ENST00000561065 PI4KAP42356 2102 aa16.66■□□□□ 0.26
LMX1B-204ENST00000561065 LNP1A1A4G5 178 aa16.66■□□□□ 0.26
LMX1B-204ENST00000561065 BECN2A8MW95 431 aa16.66■□□□□ 0.26
LMX1B-204ENST00000561065 FOXD2O60548 495 aaPredicted RBP16.66■□□□□ 0.26
LMX1B-204ENST00000561065 CAVIN2O95810 425 aa16.66■□□□□ 0.26
LMX1B-204ENST00000561065 IGLV3-27P01718 113 aa16.66■□□□□ 0.26
LMX1B-204ENST00000561065 PTMSP20962 102 aa16.66■□□□□ 0.26
LMX1B-204ENST00000561065 PTGER3P43115 390 aa16.66■□□□□ 0.26
LMX1B-204ENST00000561065 RPL34P49207 117 aaKnown RBP16.66■□□□□ 0.26
LMX1B-204ENST00000561065 MAN2A1Q16706 1144 aa16.66■□□□□ 0.26
LMX1B-204ENST00000561065 EXOC3L4Q17RC7 722 aa16.66■□□□□ 0.26
LMX1B-204ENST00000561065 TMEM215Q68D42 235 aa16.66■□□□□ 0.26
LMX1B-204ENST00000561065 DENND1BQ6P3S1 775 aa16.66■□□□□ 0.26
LMX1B-204ENST00000561065 TRIM65Q6PJ69 517 aa16.66■□□□□ 0.26
LMX1B-204ENST00000561065 NUDT18Q6ZVK8 323 aa16.66■□□□□ 0.26
LMX1B-204ENST00000561065 RNF139Q8WU17 664 aa16.66■□□□□ 0.26
LMX1B-204ENST00000561065 SPACA7Q96KW9 195 aa16.66■□□□□ 0.26
LMX1B-204ENST00000561065 UBE2TQ9NPD8 197 aaPredicted RBP16.66■□□□□ 0.26
LMX1B-204ENST00000561065 ABCC13Q9NSE7 274 aa16.66■□□□□ 0.26
LMX1B-204ENST00000561065 CYTH4Q9UIA0 394 aa16.66■□□□□ 0.26
LMX1B-204ENST00000561065 STOML2Q9UJZ1 356 aa16.66■□□□□ 0.26
LMX1B-204ENST00000561065 AJAP1Q9UKB5 411 aaPredicted RBP16.66■□□□□ 0.26
LMX1B-204ENST00000561065 PCDH15Q96QU1 1955 aa16.65■□□□□ 0.26
LMX1B-204ENST00000561065 ADAMTS9Q9P2N4 1935 aa16.65■□□□□ 0.26
LMX1B-204ENST00000561065 ATXN2Q99700 1313 aaKnown RBP16.65■□□□□ 0.26
LMX1B-204ENST00000561065 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.65■□□□□ 0.26
LMX1B-204ENST00000561065 TM4SF5O14894 197 aa16.65■□□□□ 0.26
LMX1B-204ENST00000561065 MED7O43513 233 aa16.65■□□□□ 0.26
LMX1B-204ENST00000561065 LTFP02788 710 aa16.65■□□□□ 0.26
LMX1B-204ENST00000561065 FYNP06241 537 aa16.65■□□□□ 0.26
LMX1B-204ENST00000561065 KRT5P13647 590 aa16.65■□□□□ 0.26
LMX1B-204ENST00000561065 SLC9A1P19634 815 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms