RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 CD44P16070 742 aaKnown RBP16.97■□□□□ 0.31
SNX1-213ENST00000561026 HOXD12P35452 270 aa16.97■□□□□ 0.31
SNX1-213ENST00000561026 PPP1R2P41236 205 aa16.97■□□□□ 0.31
SNX1-213ENST00000561026 NOVA1P51513 510 aaKnown RBP16.97■□□□□ 0.31
SNX1-213ENST00000561026 SHC2P98077 582 aa16.97■□□□□ 0.31
SNX1-213ENST00000561026 TRIP4Q15650 581 aaPredicted RBP16.97■□□□□ 0.31
SNX1-213ENST00000561026 GEN1Q17RS7 908 aa16.97■□□□□ 0.31
SNX1-213ENST00000561026 PKDCCQ504Y2 493 aa16.97■□□□□ 0.31
SNX1-213ENST00000561026 PEAR1Q5VY43 1037 aaPredicted RBP16.97■□□□□ 0.31
SNX1-213ENST00000561026 BSPRYQ5W0U4 402 aa16.97■□□□□ 0.31
SNX1-213ENST00000561026 SLC23A3Q6PIS1 610 aa16.97■□□□□ 0.31
SNX1-213ENST00000561026 FAM217AQ8IXS0 508 aa16.97■□□□□ 0.31
SNX1-213ENST00000561026 DEFB119Q8N690 84 aa16.97■□□□□ 0.31
SNX1-213ENST00000561026 KCTD13Q8WZ19 329 aa16.97■□□□□ 0.31
SNX1-213ENST00000561026 PLD4Q96BZ4 506 aa16.97■□□□□ 0.31
SNX1-213ENST00000561026 PIWIL1Q96J94 861 aaKnown RBP16.97■□□□□ 0.31
SNX1-213ENST00000561026 OLA1Q9NTK5 396 aaKnown RBP16.97■□□□□ 0.31
SNX1-213ENST00000561026 MAN1B1Q9UKM7 699 aa16.97■□□□□ 0.31
SNX1-213ENST00000561026 STON1Q9Y6Q2 735 aa16.97■□□□□ 0.31
SNX1-213ENST00000561026 YJEFN3A6XGL0 299 aa16.96■□□□□ 0.31
SNX1-213ENST00000561026 E7ENQ6 273 aa16.96■□□□□ 0.31
SNX1-213ENST00000561026 NPC1O15118 1278 aa16.96■□□□□ 0.31
SNX1-213ENST00000561026 PAEPP09466 180 aa16.96■□□□□ 0.31
SNX1-213ENST00000561026 SETSIPP0DME0 302 aa16.96■□□□□ 0.31
SNX1-213ENST00000561026 ZNF33AQ06730 810 aa16.96■□□□□ 0.31
SNX1-213ENST00000561026 ADIGQ0VDE8 80 aa16.96■□□□□ 0.31
SNX1-213ENST00000561026 ENPP2Q13822 863 aa16.96■□□□□ 0.31
SNX1-213ENST00000561026 SH3PXD2AQ5TCZ1 1133 aa16.96■□□□□ 0.31
SNX1-213ENST00000561026 TMEM270Q6UE05 265 aa16.96■□□□□ 0.31
SNX1-213ENST00000561026 LCLAT1Q6UWP7 414 aa16.96■□□□□ 0.31
SNX1-213ENST00000561026 FMNL3Q8IVF7 1028 aa16.96■□□□□ 0.31
SNX1-213ENST00000561026 SCML4Q8N228 414 aa16.96■□□□□ 0.31
SNX1-213ENST00000561026 DDI1Q8WTU0 396 aa16.96■□□□□ 0.31
SNX1-213ENST00000561026 TFAP2BQ92481 460 aa16.96■□□□□ 0.31
SNX1-213ENST00000561026 NT5C1BQ96P26 610 aa16.96■□□□□ 0.31
SNX1-213ENST00000561026 SLC2A11Q9BYW1 496 aa16.96■□□□□ 0.31
SNX1-213ENST00000561026 SLC6A17Q9H1V8 727 aa16.96■□□□□ 0.31
SNX1-213ENST00000561026 THAP10Q9P2Z0 257 aaPredicted RBP16.96■□□□□ 0.31
SNX1-213ENST00000561026 CLEC4EQ9ULY5 219 aa16.96■□□□□ 0.31
SNX1-213ENST00000561026 CYP8B1Q9UNU6 501 aa16.96■□□□□ 0.31
SNX1-213ENST00000561026 MAP1BP46821 2468 aaKnown RBP16.96■□□□□ 0.31
SNX1-213ENST00000561026 ATXN2Q99700 1313 aaKnown RBP16.95■□□□□ 0.3
SNX1-213ENST00000561026 CEP295Q9C0D2 2601 aa16.95■□□□□ 0.3
SNX1-213ENST00000561026 GIPC1O14908 333 aa16.95■□□□□ 0.3
SNX1-213ENST00000561026 ENGP17813 658 aa16.95■□□□□ 0.3
SNX1-213ENST00000561026 CSRP1P21291 193 aaKnown RBP16.95■□□□□ 0.3
SNX1-213ENST00000561026 BMP6P22004 513 aa16.95■□□□□ 0.3
SNX1-213ENST00000561026 HARS2P49590 506 aaKnown RBP16.95■□□□□ 0.3
SNX1-213ENST00000561026 ZNF132P52740 706 aa16.95■□□□□ 0.3
SNX1-213ENST00000561026 DUOXA1Q1HG43 343 aa16.95■□□□□ 0.3
SNX1-213ENST00000561026 CCDC40Q4G0X9 1142 aa16.95■□□□□ 0.3
SNX1-213ENST00000561026 TTI2Q6NXR4 508 aa16.95■□□□□ 0.3
SNX1-213ENST00000561026 SIX6OS1Q8N1H7 587 aa16.95■□□□□ 0.3
SNX1-213ENST00000561026 LMO3Q8TAP4 145 aa16.95■□□□□ 0.3
SNX1-213ENST00000561026 CEP76Q8TAP6 659 aa16.95■□□□□ 0.3
SNX1-213ENST00000561026 RNF139Q8WU17 664 aa16.95■□□□□ 0.3
SNX1-213ENST00000561026 SLC35F5Q8WV83 523 aa16.95■□□□□ 0.3
SNX1-213ENST00000561026 UCMAQ8WVF2 138 aa16.95■□□□□ 0.3
SNX1-213ENST00000561026 EDEM1Q92611 657 aa16.95■□□□□ 0.3
SNX1-213ENST00000561026 CNGB3Q9NQW8 809 aa16.95■□□□□ 0.3
SNX1-213ENST00000561026 ELOVL2Q9NXB9 296 aa16.95■□□□□ 0.3
SNX1-213ENST00000561026 SFMBT1Q9UHJ3 866 aa16.95■□□□□ 0.3
SNX1-213ENST00000561026 HBS1LQ9Y450 684 aaKnown RBP16.95■□□□□ 0.3
SNX1-213ENST00000561026 PI4KAP42356 2102 aa16.95■□□□□ 0.3
SNX1-213ENST00000561026 KMT2BQ9UMN6 2715 aaPredicted RBP16.94■□□□□ 0.3
SNX1-213ENST00000561026 PPP1R3GB7ZBB8 358 aa16.94■□□□□ 0.3
SNX1-213ENST00000561026 RNF225M0QZC1 329 aaPredicted RBP16.94■□□□□ 0.3
SNX1-213ENST00000561026 CFIP05156 583 aa16.94■□□□□ 0.3
SNX1-213ENST00000561026 CEACAM1P13688 526 aa16.94■□□□□ 0.3
SNX1-213ENST00000561026 IL12RB1P42701 662 aa16.94■□□□□ 0.3
SNX1-213ENST00000561026 CETN1Q12798 172 aa16.94■□□□□ 0.3
SNX1-213ENST00000561026 STARD3Q14849 445 aa16.94■□□□□ 0.3
SNX1-213ENST00000561026 CNGA2Q16280 664 aa16.94■□□□□ 0.3
SNX1-213ENST00000561026 UAP1L1Q3KQV9 507 aa16.94■□□□□ 0.3
SNX1-213ENST00000561026 FUT11Q495W5 492 aa16.94■□□□□ 0.3
SNX1-213ENST00000561026 KLHL10Q6JEL2 608 aa16.94■□□□□ 0.3
SNX1-213ENST00000561026 FOXR2Q6PJQ5 311 aa16.94■□□□□ 0.3
SNX1-213ENST00000561026 KIAA1324Q6UXG2 1013 aaKnown RBP16.94■□□□□ 0.3
SNX1-213ENST00000561026 ANKS1BQ7Z6G8 1248 aa16.94■□□□□ 0.3
SNX1-213ENST00000561026 METTL3Q86U44 580 aaKnown RBP16.94■□□□□ 0.3
SNX1-213ENST00000561026 SLC41A1Q8IVJ1 513 aa16.94■□□□□ 0.3
SNX1-213ENST00000561026 PPM1KQ8N3J5 372 aa16.94■□□□□ 0.3
SNX1-213ENST00000561026 ZNF419Q96HQ0 510 aaPredicted RBP16.94■□□□□ 0.3
SNX1-213ENST00000561026 ZSWIM1Q9BR11 485 aa16.94■□□□□ 0.3
SNX1-213ENST00000561026 ABCC13Q9NSE7 274 aa16.94■□□□□ 0.3
SNX1-213ENST00000561026 STOML2Q9UJZ1 356 aa16.94■□□□□ 0.3
SNX1-213ENST00000561026 SLC6A14Q9UN76 642 aa16.94■□□□□ 0.3
SNX1-213ENST00000561026 PCDHB4Q9Y5E5 795 aa16.94■□□□□ 0.3
SNX1-213ENST00000561026 TNRC6BQ9UPQ9 1833 aaKnown RBP16.94■□□□□ 0.3
SNX1-213ENST00000561026 P4HA2O15460 535 aa16.93■□□□□ 0.3
SNX1-213ENST00000561026 TIMM44O43615 452 aa16.93■□□□□ 0.3
SNX1-213ENST00000561026 GABBR2O75899 941 aa16.93■□□□□ 0.3
SNX1-213ENST00000561026 SERPINF2P08697 491 aa16.93■□□□□ 0.3
SNX1-213ENST00000561026 LCP1P13796 627 aa16.93■□□□□ 0.3
SNX1-213ENST00000561026 MAPK8P45983 427 aa16.93■□□□□ 0.3
SNX1-213ENST00000561026 DAOAP59103 153 aa16.93■□□□□ 0.3
SNX1-213ENST00000561026 EIF4HQ15056 248 aaKnown RBP16.93■□□□□ 0.3
SNX1-213ENST00000561026 E2F5Q15329 346 aa16.93■□□□□ 0.3
SNX1-213ENST00000561026 MPPE1Q53F39 396 aa16.93■□□□□ 0.3
SNX1-213ENST00000561026 PMF1Q6P1K2 205 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms