RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 FAM78AQ5JUQ0 283 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 STXBP5Q5T5C0 1151 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 SYPL2Q5VXT5 272 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 ZNF662Q6ZS27 426 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 MFSD6LQ8IWD5 586 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 ADHFE1Q8IWW8 467 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 RNF10Q8N5U6 811 aaKnown RBP9.61□□□□□ -0.87
LDLR-210ENST00000559340 ACRBPQ8NEB7 543 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 JOSD2Q8TAC2 188 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 BPIFB1Q8TDL5 484 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 SH3RF2Q8TEC5 729 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 USP13Q92995 863 aaPredicted RBP9.61□□□□□ -0.87
LDLR-210ENST00000559340 NT5C3BQ969T7 300 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 OTUB2Q96DC9 234 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 PIWIL1Q96J94 861 aaKnown RBP9.61□□□□□ -0.87
LDLR-210ENST00000559340 ZSWIM3Q96MP5 696 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 PACSIN1Q9BY11 444 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 IRX2Q9BZI1 471 aaPredicted RBP9.61□□□□□ -0.87
LDLR-210ENST00000559340 WDCPQ9H6R7 721 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 SFMBT1Q9UHJ3 866 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 CDH22Q9UJ99 828 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 ANAPC7Q9UJX3 599 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 NUDT5Q9UKK9 219 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 NUP205Q92621 2012 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 MUC3AQ02505 3323 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 GOLGA6L9A6NEM1 432 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 HEPACAM2A8MVW5 462 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 C2CD4DB7Z1M9 353 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 LEFTY2O00292 366 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 MDM4O15151 490 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 IRAK2O43187 625 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 IGLV3-25P01717 112 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 HMBSP08397 361 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 IL9P15248 144 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 PSMC3P17980 439 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 CHKAP35790 457 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 SLC1A1P43005 524 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 IFNAR2P48551 515 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 CXCR3P49682 368 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 PGFP49763 221 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 ATP11AP98196 1134 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 NR1H3Q13133 447 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 NME3Q13232 169 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 PDGFRLQ15198 375 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 CCDC14Q49A88 953 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 HS1BP3Q53T59 392 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 TMEM31Q5JXX7 168 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 HTR3DQ70Z44 454 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 TAC4Q86UU9 113 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 DNAAF5Q86Y56 855 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 SYCE1Q8N0S2 351 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 EMC1Q8N766 993 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 NIPA2Q8N8Q9 360 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 FAM172AQ8WUF8 416 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 CENPIQ92674 756 aaPredicted RBP9.6□□□□□ -0.87
LDLR-210ENST00000559340 ARHGEF26Q96DR7 871 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 BTN2A3PQ96KV6 586 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 CFAP57Q96MR6 1250 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 SLC22A12Q96S37 553 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 TBCBQ99426 244 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 GKN1Q9NS71 199 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 SMPD4Q9NXE4 827 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 CFAP97Q9P2B7 532 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 LIMD1Q9UGP4 676 aa9.6□□□□□ -0.87
LDLR-210ENST00000559340 KIF26AQ9ULI4 1882 aaPredicted RBP9.59□□□□□ -0.87
LDLR-210ENST00000559340 MYO18AQ92614 2054 aaKnown RBP9.59□□□□□ -0.87
LDLR-210ENST00000559340 SYNJ2BP-COX16A0A087WUM0 186 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 TYW5A2RUC4 315 aaKnown RBP9.59□□□□□ -0.87
LDLR-210ENST00000559340 LOC730098B7Z3J9 87 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 ANHXE9PGG2 379 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 PRPSAP2O60256 369 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 GPR37L1O60883 481 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 STC2O76061 302 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 PROSCO94903 275 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 GJB6O95452 261 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 CYBBP04839 570 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 IRF1P10914 325 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 MSNP26038 577 aaKnown RBP9.59□□□□□ -0.87
LDLR-210ENST00000559340 HOXD11P31277 338 aaPredicted RBP9.59□□□□□ -0.87
LDLR-210ENST00000559340 MAN1A1P33908 653 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 PCK1P35558 622 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 ZNF135P52742 658 aaPredicted RBP9.59□□□□□ -0.87
LDLR-210ENST00000559340 AMPD2Q01433 879 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 USP4Q13107 963 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 MESDQ14696 234 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 CDO1Q16878 200 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 BOLA3Q53S33 107 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 ODF2Q5BJF6 829 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 ZC3H12AQ5D1E8 599 aaKnown RBP9.59□□□□□ -0.87
LDLR-210ENST00000559340 TANGO2Q6ICL3 276 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 SCYL2Q6P3W7 929 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 ADAM32Q8TC27 787 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 IRF7Q92985 503 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 EXOC4Q96A65 974 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 SLC39A13Q96H72 371 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 HAPLN3Q96S86 360 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 DESI2Q9BSY9 194 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 LRFN3Q9BTN0 628 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 TRMT61BQ9BVS5 477 aaKnown RBP9.59□□□□□ -0.87
LDLR-210ENST00000559340 EPHX3Q9H6B9 360 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms