RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 CAPSQ13938 189 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.46□□□□□ -1.54
LDLR-209ENST00000558528 ZC2HC1CQ53FD0 456 aaPredicted RBP5.46□□□□□ -1.54
LDLR-209ENST00000558528 TOR2AQ5JU69 321 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 THEMIS2Q5TEJ8 643 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 TCERG1LQ5VWI1 586 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 ICE2Q659A1 982 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 MZT2BQ6NZ67 158 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 PGBD2Q6P3X8 592 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 NPNTQ6UXI9 565 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 GBP6Q6ZN66 633 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 ARHGAP36Q6ZRI8 547 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 ESPNLQ6ZVH7 1005 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 CACNA2D4Q7Z3S7 1137 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 DAAM2Q86T65 1068 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 RPAINQ86UA6 219 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 ZSCAN30Q86W11 494 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 CXorf67Q86X51 503 aaPredicted RBP5.46□□□□□ -1.54
LDLR-209ENST00000558528 TMTC1Q8IUR5 882 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 LRRC8AQ8IWT6 810 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 COLGALT2Q8IYK4 626 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 HACE1Q8IYU2 909 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 SPC24Q8NBT2 197 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 KLHDC9Q8NEP7 349 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 NEK11Q8NG66 645 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 OR8K1Q8NGG5 319 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 PPP1R35Q8TAP8 253 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 RSAD2Q8WXG1 361 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 AUTS2Q8WXX7 1259 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 GLT1D1Q96MS3 346 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 DEFB118Q96PH6 123 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 PANX2Q96RD6 677 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 SH2D3AQ9BRG2 576 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 GPR62Q9BZJ7 368 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 FZD8Q9H461 694 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 SMOC1Q9H4F8 434 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 PRDM5Q9NQX1 630 aaPredicted RBP5.46□□□□□ -1.54
LDLR-209ENST00000558528 CLDND1Q9NY35 253 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 HSPBP1Q9NZL4 362 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 FNIP2Q9P278 1114 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.46□□□□□ -1.54
LDLR-209ENST00000558528 MSRAQ9UJ68 235 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 FBXL5Q9UKA1 691 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 AGO2Q9UKV8 859 aaKnown RBP5.46□□□□□ -1.54
LDLR-209ENST00000558528 MYO6Q9UM54 1294 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 CAPN11Q9UMQ6 739 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 TNFSF13BQ9Y275 285 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 B3GALT1Q9Y5Z6 326 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 BZW2Q9Y6E2 419 aaKnown RBP5.46□□□□□ -1.54
LDLR-209ENST00000558528 SQORQ9Y6N5 450 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 TCHHQ07283 1943 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 A0A0B4J269 797 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 TMEM150BA6NC51 233 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 GOLGA6L9A6NEM1 432 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 DDX3XO00571 662 aaKnown RBP eCLIP5.45□□□□□ -1.54
LDLR-209ENST00000558528 NRG2O14511 850 aaPredicted RBP5.45□□□□□ -1.54
LDLR-209ENST00000558528 DVL2O14641 736 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 OGTO15294 1046 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 ARHGAP6O43182 974 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 AP5Z1O43299 807 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 ZSCAN12O43309 604 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 NPHS1O60500 1241 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 ZC3H11AO75152 810 aaKnown RBP eCLIP5.45□□□□□ -1.54
LDLR-209ENST00000558528 LRRN2O75325 713 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 AKAP3O75969 853 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 IL18RAPO95256 599 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 IPO7O95373 1038 aaKnown RBP5.45□□□□□ -1.54
LDLR-209ENST00000558528 ZNF286BP0CG31 522 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 MCF2P10911 925 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 DRD2P14416 443 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 KRT15P19012 456 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 TNFSF4P23510 183 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 HOXD13P35453 343 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 PBX1P40424 430 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 PRIM2P49643 509 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 CYP2J2P51589 502 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 CRYBB1P53674 252 aaPredicted RBP5.45□□□□□ -1.54
LDLR-209ENST00000558528 JAM2P57087 298 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 PCBP3P57721 371 aaKnown RBP5.45□□□□□ -1.54
LDLR-209ENST00000558528 ZBED6P86452 979 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 CDK17Q00537 523 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 BFSP1Q12934 665 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 CNN3Q15417 329 aaKnown RBP5.45□□□□□ -1.54
LDLR-209ENST00000558528 SNRNP35Q16560 246 aaKnown RBP5.45□□□□□ -1.54
LDLR-209ENST00000558528 EXOC3L4Q17RC7 722 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 DCAF4L1Q3SXM0 396 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 HSP90AA4PQ58FG1 418 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 DCAF17Q5H9S7 520 aaPredicted RBP5.45□□□□□ -1.54
LDLR-209ENST00000558528 GJC2Q5T442 439 aaPredicted RBP5.45□□□□□ -1.54
LDLR-209ENST00000558528 KRT39Q6A163 491 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 RFX8Q6ZV50 586 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 ENOSF1Q7L5Y1 443 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 APTXQ7Z2E3 356 aaKnown RBP5.45□□□□□ -1.54
LDLR-209ENST00000558528 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.45□□□□□ -1.54
LDLR-209ENST00000558528 OSTM1Q86WC4 334 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 PHYKPLQ8IUZ5 450 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 Q8N1Y9 231 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 LRRC71Q8N4P6 559 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 LINC01465Q8N7H1 131 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 CACTINQ8WUQ7 758 aaKnown RBP5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms