RNA–Protein interactions for RNA: ENST00000557782.1

TDP1-217, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 318 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-217ENST00000557782 LOC105369274A0A096LPK9 316 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 LOC102723532A0A0G2JNH3 316 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 CCDC195A0A1B0GUA6 201 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 A0A1W2PQ09 198 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 GXYLT2A0PJZ3 443 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 TBC1D3BA6NDS4 549 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 TBC1D3FA6NER0 549 aaPredicted RBP4.09□□□□□ -1.75
TDP1-217ENST00000557782 LIPT2A6NK58 231 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 C16orf96A6NNT2 1141 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 A8MV72 311 aaPredicted RBP4.09□□□□□ -1.75
TDP1-217ENST00000557782 TBC1D3LB9A6J9 549 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 PI4K2BG5E9Z4 385 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 BCAT2O15382 392 aaPredicted RBP4.09□□□□□ -1.75
TDP1-217ENST00000557782 TRIM13O60858 407 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 WDR47O94967 919 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 HEXIM1O94992 359 aaKnown RBP4.09□□□□□ -1.75
TDP1-217ENST00000557782 SLU7O95391 586 aaKnown RBP4.09□□□□□ -1.75
TDP1-217ENST00000557782 KRT1P04264 644 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 EIF2S1P05198 315 aaKnown RBP4.09□□□□□ -1.75
TDP1-217ENST00000557782 TBC1D3HP0C7X1 549 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 COX7A2P14406 83 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 ATF2P15336 505 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 CD19P15391 556 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 STMN1P16949 149 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 ITGALP20701 1170 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 DRD1P21728 446 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 SLC6A2P23975 617 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 PPIFP30405 207 aaKnown RBP4.09□□□□□ -1.75
TDP1-217ENST00000557782 UQCRC1P31930 480 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 MSX2P35548 267 aaPredicted RBP4.09□□□□□ -1.75
TDP1-217ENST00000557782 CPA2P48052 419 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 TOB1P50616 345 aaPredicted RBP4.09□□□□□ -1.75
TDP1-217ENST00000557782 RAD23AP54725 363 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 UBXN1Q04323 297 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 TFCP2Q12800 502 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 NAA25Q14CX7 972 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 MED22Q15528 200 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 ZNF568Q3ZCX4 644 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 LRRC24Q50LG9 513 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 RUNDC3AQ59EK9 446 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 TMEM196Q5HYL7 178 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 GARNL3Q5VVW2 1013 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 ANKRD40Q6AI12 368 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 TBC1D3GQ6DHY5 549 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 SFRP4Q6FHJ7 346 aaPredicted RBP4.09□□□□□ -1.75
TDP1-217ENST00000557782 TBC1D3CQ6IPX1 549 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 CCDC144NLQ6NUI1 221 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 TAF2Q6P1X5 1199 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 PLBD1Q6P4A8 553 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 KLHL35Q6PF15 583 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 C11orf88Q6PI97 169 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 NCEH1Q6PIU2 408 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 TMEM108Q6UXF1 575 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 CLEC9AQ6UXN8 241 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 Q6ZUG5 572 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 DOK3Q7L591 496 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 RRM2BQ7LG56 351 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 RAB11FIP4Q86YS3 637 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 CEP97Q8IW35 865 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 HSCBQ8IWL3 235 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 TBC1D3Q8IZP1 549 aaPredicted RBP4.09□□□□□ -1.75
TDP1-217ENST00000557782 OR4N4Q8N0Y3 316 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 NUP93Q8N1F7 819 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 CARNMT1Q8N4J0 409 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 AGBL5Q8NDL9 886 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 GSDMBQ8TAX9 411 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 RUFY2Q8WXA3 655 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 RABGGTAQ92696 567 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 SMARCE1Q969G3 411 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 CCDC47Q96A33 483 aaKnown RBP4.09□□□□□ -1.75
TDP1-217ENST00000557782 ARRDC3Q96B67 414 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 ZBTB8AQ96BR9 441 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 TBC1D31Q96DN5 1066 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 MCRS1Q96EZ8 462 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 MASTLQ96GX5 879 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 LIN37Q96GY3 246 aaPredicted RBP4.09□□□□□ -1.75
TDP1-217ENST00000557782 AJUBAQ96IF1 538 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 KIRREL1Q96J84 757 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 C5orf34Q96MH7 638 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 GBP5Q96PP8 586 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 GPHA2Q96T91 129 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 PIP5K1AQ99755 562 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 TCF25Q9BQ70 676 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 LBHD1Q9BQE6 289 aaPredicted RBP4.09□□□□□ -1.75
TDP1-217ENST00000557782 DESI2Q9BSY9 194 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 APOL6Q9BWW8 343 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 REXO4Q9GZR2 422 aaKnown RBP4.09□□□□□ -1.75
TDP1-217ENST00000557782 SH2D4AQ9H788 454 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 SEMA4BQ9NPR2 832 aaPredicted RBP4.09□□□□□ -1.75
TDP1-217ENST00000557782 PCDHB16Q9NRJ7 776 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 SIRT5Q9NXA8 310 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 TRPC5Q9UL62 973 aaPredicted RBP4.09□□□□□ -1.75
TDP1-217ENST00000557782 NDRG4Q9ULP0 352 aaKnown RBP4.09□□□□□ -1.75
TDP1-217ENST00000557782 SLC27A6Q9Y2P4 619 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 NEU2Q9Y3R4 380 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 PCDHB7Q9Y5E2 793 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 PCDHA10Q9Y5I2 948 aa4.09□□□□□ -1.75
TDP1-217ENST00000557782 AGAP5A6NIR3 686 aa4.08□□□□□ -1.76
TDP1-217ENST00000557782 PRR5-ARHGAP8B1AHC4 643 aa4.08□□□□□ -1.76
TDP1-217ENST00000557782 TEX22C9J3V5 150 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms