RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 EIF3DO15371 548 aaKnown RBP eCLIP8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 TNFSF14O43557 240 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 TLX3O43711 291 aaPredicted RBP8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 STC2O76061 302 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 VNN1O95497 513 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 KLKB1P03952 638 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 PLA2G2AP14555 144 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 OXTRP30559 389 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 ATICP31939 592 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 ATP5C1P36542 298 aaKnown RBP8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 AFF3P51826 1226 aaKnown RBP8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 IL9RQ01113 521 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 GOLGA8FQ08AF8 430 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 GOLGA8DPQ0D2H9 430 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 C19orf57Q0VDD7 668 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 ZNF699Q32M78 642 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 KCNT1Q5JUK3 1230 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 CCDC73Q6ZRK6 1079 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 CLEC17AQ6ZS10 378 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 STXBP4Q6ZWJ1 553 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 NELFCDQ8IXH7 590 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 PDILTQ8N807 584 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 PDCD7Q8N8D1 485 aaKnown RBP8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 C12orf29Q8N999 325 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 XXYLT1Q8NBI6 393 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 SLC39A7Q92504 469 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 PRCCQ92733 491 aaPredicted RBP8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 SYAP1Q96A49 352 aaPredicted RBP8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 PIWIL1Q96J94 861 aaKnown RBP8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 TNIP3Q96KP6 325 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 FBXO44Q9H4M3 255 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 VRTNQ9H8Y1 702 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 CLEC4EQ9ULY5 219 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 SCML2Q9UQR0 700 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 COL27A1Q8IZC6 1860 aaPredicted RBP8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 CYSRT1A8MQ03 144 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 CBX4O00257 560 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 NPC1O15118 1278 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 ATXN7O15265 892 aaPredicted RBP8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 SYNCRIPO60506 623 aaKnown RBP8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 PHACTR2O75167 634 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 CLSTN1O94985 981 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 RARGP13631 454 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 HLA-EP13747 358 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 ADORA2BP29275 332 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 ACSL1P33121 698 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 GRK6P43250 576 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 GRIA4P48058 902 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 CCT8P50990 548 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 ZNF132P52740 706 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 NDST1P52848 882 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 CEBPZQ03701 1054 aaKnown RBP8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 BIRC3Q13489 604 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 ZNF667Q5HYK9 610 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 C10orf120Q5SQS8 335 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 TMEM215Q68D42 235 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 KLHDC10Q6PID8 442 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 CLEC20AQ6ZU45 233 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 ANKS1BQ7Z6G8 1248 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 SCD5Q86SK9 330 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 ZNF507Q8TCN5 953 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 IGSF8Q969P0 613 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 NUP58Q9BVL2 599 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 PCED1AQ9H1Q7 454 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 TNMDQ9H2S6 317 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 PRORYQ9H606 182 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 TM9SF3Q9HD45 589 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 FOXD4L1Q9NU39 408 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 DNMT3LQ9UJW3 386 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 ANKRD6Q9Y2G4 727 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 ZBTB32Q9Y2Y4 487 aaPredicted RBP8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 RAI2Q9Y5P3 530 aa8.59□□□□□ -1.03
CCDC88C-214ENST00000557507 UBE4BO95155 1302 aa8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 PIEZO2Q9H5I5 2752 aa8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 RP1P56715 2156 aa8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 DOPEY2Q9Y3R5 2298 aa8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 LRRIQ3A6PVS8 624 aaPredicted RBP8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 PCDHGA12O60330 932 aa8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 EPHX1P07099 455 aa8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 HMBSP08397 361 aa8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 FAM200BP0CF97 657 aa8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 ACADMP11310 421 aa8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 CORO1AP31146 461 aaKnown RBP8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 EIF2S3P41091 472 aaKnown RBP8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 CTSKP43235 329 aa8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 ASPAP45381 313 aa8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 PLA2G4AP47712 749 aa8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 ASIC1P78348 528 aa8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 NCOA4Q13772 614 aa8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 E2F4Q16254 413 aa8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 BMT2Q1RMZ1 405 aa8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 FAM26FQ5R3K3 315 aa8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 SPOPLQ6IQ16 392 aa8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 SERPINA13PQ6UXR4 307 aa8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 ZNF366Q8N895 744 aa8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 OR2T3Q8NH03 318 aa8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 UCMAQ8WVF2 138 aa8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 BIRC7Q96CA5 298 aa8.58□□□□□ -1.04
CCDC88C-214ENST00000557507 NXPE2Q96DL1 559 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms