RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	BAHD1	Q8TBE0	780 aa	Predicted RBP	13.3	□□□□□ -0.28
SHMT2-223	ENST00000556689	CDK5RAP1	Q96SZ6	601 aa	Known RBP	13.3	□□□□□ -0.28
SHMT2-223	ENST00000556689	PCED1A	Q9H1Q7	454 aa		13.3	□□□□□ -0.28
SHMT2-223	ENST00000556689	BLZF1	Q9H2G9	400 aa		13.3	□□□□□ -0.28
SHMT2-223	ENST00000556689	MAGEF1	Q9HAY2	307 aa		13.3	□□□□□ -0.28
SHMT2-223	ENST00000556689	DMAC2	Q9NW81	257 aa		13.3	□□□□□ -0.28
SHMT2-223	ENST00000556689	HMGXB4	Q9UGU5	601 aa		13.3	□□□□□ -0.28
SHMT2-223	ENST00000556689	MTMR6	Q9Y217	621 aa		13.3	□□□□□ -0.28
SHMT2-223	ENST00000556689	CELSR3	Q9NYQ7	3312 aa		13.29	□□□□□ -0.28
SHMT2-223	ENST00000556689	POLR2D	O15514	142 aa	Known RBP	13.29	□□□□□ -0.28
SHMT2-223	ENST00000556689	CUTA	O60888	179 aa		13.29	□□□□□ -0.28
SHMT2-223	ENST00000556689	DKK1	O94907	266 aa		13.29	□□□□□ -0.28
SHMT2-223	ENST00000556689	KIF20A	O95235	890 aa		13.29	□□□□□ -0.28
SHMT2-223	ENST00000556689	CYBB	P04839	570 aa		13.29	□□□□□ -0.28
SHMT2-223	ENST00000556689	CASP1	P29466	404 aa		13.29	□□□□□ -0.28
SHMT2-223	ENST00000556689	CSNK1E	P49674	416 aa	Known RBP	13.29	□□□□□ -0.28
SHMT2-223	ENST00000556689	AFF3	P51826	1226 aa	Known RBP	13.29	□□□□□ -0.28
SHMT2-223	ENST00000556689	COPA	P53621	1224 aa		13.29	□□□□□ -0.28
SHMT2-223	ENST00000556689	DLG4	P78352	724 aa		13.29	□□□□□ -0.28
SHMT2-223	ENST00000556689	ARID5A	Q03989	594 aa		13.29	□□□□□ -0.28
SHMT2-223	ENST00000556689	EIF4H	Q15056	248 aa	Known RBP	13.29	□□□□□ -0.28
SHMT2-223	ENST00000556689	SHC4	Q6S5L8	630 aa		13.29	□□□□□ -0.28
SHMT2-223	ENST00000556689	SV2A	Q7L0J3	742 aa		13.29	□□□□□ -0.28
SHMT2-223	ENST00000556689	CCDC186	Q7Z3E2	898 aa		13.29	□□□□□ -0.28
SHMT2-223	ENST00000556689	ANKS1B	Q7Z6G8	1248 aa		13.29	□□□□□ -0.28
SHMT2-223	ENST00000556689	SLC9A9	Q8IVB4	645 aa		13.29	□□□□□ -0.28
SHMT2-223	ENST00000556689	PIWIL1	Q96J94	861 aa	Known RBP	13.29	□□□□□ -0.28
SHMT2-223	ENST00000556689	NT5C1A	Q9BXI3	368 aa		13.29	□□□□□ -0.28
SHMT2-223	ENST00000556689	CIPC	Q9C0C6	399 aa		13.29	□□□□□ -0.28
SHMT2-223	ENST00000556689	CLIC5	Q9NZA1	410 aa		13.29	□□□□□ -0.28
SHMT2-223	ENST00000556689	AGO1	Q9UL18	857 aa	Known RBP	13.29	□□□□□ -0.28
SHMT2-223	ENST00000556689	IKBKB	O14920	756 aa		13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	TNFSF14	O43557	240 aa		13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	ASS1	P00966	412 aa	Known RBP	13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	EPHX1	P07099	455 aa		13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	HMBS	P08397	361 aa		13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	PRKCH	P24723	683 aa		13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	CORO1A	P31146	461 aa	Known RBP	13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	ASPA	P45381	313 aa		13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	TEAD4	Q15561	434 aa		13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	KIF19	Q2TAC6	998 aa		13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	SPOPL	Q6IQ16	392 aa		13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	SERPINA13P	Q6UXR4	307 aa		13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	FAM124A	Q86V42	546 aa		13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	MARCH9	Q86YJ5	346 aa		13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	TMC2	Q8TDI7	906 aa		13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	DDI1	Q8WTU0	396 aa		13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	TMEM174	Q8WUU8	243 aa		13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	SORCS1	Q8WY21	1168 aa		13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	SNX19	Q92543	992 aa		13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	ZNF396	Q96N95	335 aa	Predicted RBP	13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	BBC3	Q96PG8	261 aa	Predicted RBP	13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	TWNK	Q96RR1	684 aa		13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	SLC2A11	Q9BYW1	496 aa		13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	DNAI2	Q9GZS0	605 aa		13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	CYP3A43	Q9HB55	503 aa		13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	RASAL2	Q9UJF2	1139 aa		13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	BTBD3	Q9Y2F9	522 aa		13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	USP3	Q9Y6I4	520 aa		13.28	□□□□□ -0.28
SHMT2-223	ENST00000556689	ITPR1	Q14643	2758 aa		13.27	□□□□□ -0.28
SHMT2-223	ENST00000556689	PLXNB3	Q9ULL4	1909 aa		13.27	□□□□□ -0.28
SHMT2-223	ENST00000556689	SMG1	Q96Q15	3661 aa	Known RBP	13.27	□□□□□ -0.29
SHMT2-223	ENST00000556689	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.27	□□□□□ -0.29
SHMT2-223	ENST00000556689	HLA-DRA	P01903	254 aa		13.27	□□□□□ -0.29
SHMT2-223	ENST00000556689	PIK3CA	P42336	1068 aa		13.27	□□□□□ -0.29
SHMT2-223	ENST00000556689	AFM	P43652	599 aa		13.27	□□□□□ -0.29
SHMT2-223	ENST00000556689	INCA1	Q0VD86	236 aa		13.27	□□□□□ -0.29
SHMT2-223	ENST00000556689	EFEMP1	Q12805	493 aa		13.27	□□□□□ -0.29
SHMT2-223	ENST00000556689	CUL4B	Q13620	913 aa		13.27	□□□□□ -0.29
SHMT2-223	ENST00000556689	CACUL1	Q86Y37	369 aa		13.27	□□□□□ -0.29
SHMT2-223	ENST00000556689	DENND1C	Q8IV53	801 aa		13.27	□□□□□ -0.29
SHMT2-223	ENST00000556689	CPXM2	Q8N436	756 aa		13.27	□□□□□ -0.29
SHMT2-223	ENST00000556689	PDCD7	Q8N8D1	485 aa	Known RBP	13.27	□□□□□ -0.29
SHMT2-223	ENST00000556689	RBBP8NL	Q8NC74	664 aa	Predicted RBP	13.27	□□□□□ -0.29
SHMT2-223	ENST00000556689	ENGASE	Q8NFI3	743 aa		13.27	□□□□□ -0.29
SHMT2-223	ENST00000556689	OR2T3	Q8NH03	318 aa		13.27	□□□□□ -0.29
SHMT2-223	ENST00000556689	INTS4	Q96HW7	963 aa	Known RBP	13.27	□□□□□ -0.29
SHMT2-223	ENST00000556689	DUSP16	Q9BY84	665 aa		13.27	□□□□□ -0.29
SHMT2-223	ENST00000556689	C6orf106	Q9H6K1	298 aa	Predicted RBP	13.27	□□□□□ -0.29
SHMT2-223	ENST00000556689	STRIP2	Q9ULQ0	834 aa		13.27	□□□□□ -0.29
SHMT2-223	ENST00000556689	CLEC4E	Q9ULY5	219 aa		13.27	□□□□□ -0.29
SHMT2-223	ENST00000556689	PLA2G4C	Q9UP65	541 aa		13.27	□□□□□ -0.29
SHMT2-223	ENST00000556689	ANKRD6	Q9Y2G4	727 aa		13.27	□□□□□ -0.29
SHMT2-223	ENST00000556689	SNX11	Q9Y5W9	270 aa		13.27	□□□□□ -0.29
SHMT2-223	ENST00000556689	ANKRD11	Q6UB99	2663 aa	Predicted RBP	13.27	□□□□□ -0.29
SHMT2-223	ENST00000556689		A0A087WV48	116 aa		13.26	□□□□□ -0.29
SHMT2-223	ENST00000556689	KCNK3	O14649	394 aa		13.26	□□□□□ -0.29
SHMT2-223	ENST00000556689	YEATS4	O95619	227 aa		13.26	□□□□□ -0.29
SHMT2-223	ENST00000556689	ACSL1	P33121	698 aa		13.26	□□□□□ -0.29
SHMT2-223	ENST00000556689	GRK6	P43250	576 aa		13.26	□□□□□ -0.29
SHMT2-223	ENST00000556689	CAMK2B	Q13554	666 aa		13.26	□□□□□ -0.29
SHMT2-223	ENST00000556689	CAMK2G	Q13555	558 aa	Predicted RBP	13.26	□□□□□ -0.29
SHMT2-223	ENST00000556689	SMAD1	Q15797	465 aa	Known RBP	13.26	□□□□□ -0.29
SHMT2-223	ENST00000556689	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	13.26	□□□□□ -0.29
SHMT2-223	ENST00000556689	TMEM215	Q68D42	235 aa		13.26	□□□□□ -0.29
SHMT2-223	ENST00000556689	SCUBE3	Q8IX30	993 aa		13.26	□□□□□ -0.29
SHMT2-223	ENST00000556689	ARHGAP18	Q8N392	663 aa		13.26	□□□□□ -0.29
SHMT2-223	ENST00000556689	IGSF8	Q969P0	613 aa		13.26	□□□□□ -0.29
SHMT2-223	ENST00000556689	IMPG2	Q9BZV3	1241 aa		13.26	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms