RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 C12orf50Q8NA57 414 aaPredicted RBP15.32■□□□□ 0.04
CUX1-215ENST00000556210 ALKBH8Q96BT7 664 aaKnown RBP15.32■□□□□ 0.04
CUX1-215ENST00000556210 UBQLN1Q9UMX0 589 aaKnown RBP15.32■□□□□ 0.04
CUX1-215ENST00000556210 RNF103O00237 685 aa15.32■□□□□ 0.04
CUX1-215ENST00000556210 CILPO75339 1184 aa15.32■□□□□ 0.04
CUX1-215ENST00000556210 FAM200BP0CF97 657 aa15.32■□□□□ 0.04
CUX1-215ENST00000556210 NDUFV1P49821 464 aa15.32■□□□□ 0.04
CUX1-215ENST00000556210 MBTD1Q05BQ5 628 aa15.32■□□□□ 0.04
CUX1-215ENST00000556210 USP10Q14694 798 aaKnown RBP15.32■□□□□ 0.04
CUX1-215ENST00000556210 FAM13CQ8NE31 585 aa15.32■□□□□ 0.04
CUX1-215ENST00000556210 PIP4K2CQ8TBX8 421 aa15.32■□□□□ 0.04
CUX1-215ENST00000556210 TMEM109Q9BVC6 243 aa15.32■□□□□ 0.04
CUX1-215ENST00000556210 WWP1Q9H0M0 922 aa15.32■□□□□ 0.04
CUX1-215ENST00000556210 PDZD7Q9H5P4 517 aa15.32■□□□□ 0.04
CUX1-215ENST00000556210 CORO1CQ9ULV4 474 aaPredicted RBP15.32■□□□□ 0.04
CUX1-215ENST00000556210 PCNTO95613 3336 aa15.32■□□□□ 0.04
CUX1-215ENST00000556210 MYO18AQ92614 2054 aaKnown RBP15.32■□□□□ 0.04
CUX1-215ENST00000556210 TFE3P19532 575 aaPredicted RBP15.32■□□□□ 0.04
CUX1-215ENST00000556210 TGM2P21980 687 aa15.32■□□□□ 0.04
CUX1-215ENST00000556210 PSMB4P28070 264 aa15.32■□□□□ 0.04
CUX1-215ENST00000556210 N4BP2L1Q5TBK1 243 aaPredicted RBP15.32■□□□□ 0.04
CUX1-215ENST00000556210 PLD5Q8N7P1 536 aa15.32■□□□□ 0.04
CUX1-215ENST00000556210 SEC14L1Q92503 715 aa15.32■□□□□ 0.04
CUX1-215ENST00000556210 DDX43Q9NXZ2 648 aaKnown RBP15.32■□□□□ 0.04
CUX1-215ENST00000556210 SIX4Q9UIU6 781 aa15.32■□□□□ 0.04
CUX1-215ENST00000556210 DRG1Q9Y295 367 aaKnown RBP15.32■□□□□ 0.04
CUX1-215ENST00000556210 BST1Q10588 318 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 POU6F1Q14863 301 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 RPS6KA2Q15349 733 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 ZNF618Q5T7W0 954 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 CMC1Q7Z7K0 106 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 MYLK4Q86YV6 388 aaPredicted RBP15.31■□□□□ 0.04
CUX1-215ENST00000556210 HDAC11Q96DB2 347 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 SPON2Q9BUD6 331 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 VCX3BQ9H321 246 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 CYP3A43Q9HB55 503 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 VCX3AQ9NNX9 186 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 ARHGEF3Q9NR81 526 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.31■□□□□ 0.04
CUX1-215ENST00000556210 KIAA1551Q9HCM1 1747 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 IQCF3P0C7M6 154 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 IVDP26440 423 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 GMPRP36959 345 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 ILDR2Q71H61 639 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.31■□□□□ 0.041e-12■■■□□ 16.9
CUX1-215ENST00000556210 IGDCC3Q8IVU1 814 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 OR52K1Q8NGK4 314 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 HTR3CQ8WXA8 447 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 MTBPQ96DY7 904 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 PRDM12Q9H4Q4 367 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 PCDH18Q9HCL0 1135 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 CYP4F12Q9HCS2 524 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 NDE1Q9NXR1 346 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 PAPSS1O43252 624 aaPredicted RBP15.31■□□□□ 0.04
CUX1-215ENST00000556210 SLC26A2P50443 739 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 BCAT1P54687 386 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 ZNF252P-AS1Q0IIN9 211 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 ACVR2BQ13705 512 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 PDK4Q16654 411 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 LRRC38Q5VT99 294 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 SLC27A1Q6PCB7 646 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 MTHFD1LQ6UB35 978 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 LAYNQ6UX15 382 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 TSHZ1Q6ZSZ6 1077 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 MIB1Q86YT6 1006 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 MAB21L3Q8N8X9 362 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 PPWD1Q96BP3 646 aaKnown RBP15.31■□□□□ 0.04
CUX1-215ENST00000556210 RNF39Q9H2S5 420 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 ACSS3Q9H6R3 686 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 WDCPQ9H6R7 721 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 NRDE2Q9H7Z3 1164 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 MFHAS1Q9Y4C4 1052 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 SNX10Q9Y5X0 201 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 ABCA3Q99758 1704 aa15.31■□□□□ 0.04
CUX1-215ENST00000556210 CXCL11O14625 94 aa15.3■□□□□ 0.04
CUX1-215ENST00000556210 B4GALT4O60513 344 aa15.3■□□□□ 0.04
CUX1-215ENST00000556210 PDE5AO76074 875 aa15.3■□□□□ 0.04
CUX1-215ENST00000556210 ENO3P13929 434 aaPredicted RBP15.3■□□□□ 0.04
CUX1-215ENST00000556210 YWHAZP63104 245 aaKnown RBP15.3■□□□□ 0.04
CUX1-215ENST00000556210 LRRC23Q53EV4 343 aaPredicted RBP15.3■□□□□ 0.04
CUX1-215ENST00000556210 STRA8Q7Z7C7 330 aa15.3■□□□□ 0.04
CUX1-215ENST00000556210 ULBP1Q9BZM6 244 aa15.3■□□□□ 0.04
CUX1-215ENST00000556210 IARS2Q9NSE4 1012 aaKnown RBP15.3■□□□□ 0.04
CUX1-215ENST00000556210 ITGA11Q9UKX5 1188 aa15.3■□□□□ 0.04
CUX1-215ENST00000556210 SCAMP3O14828 347 aaKnown RBP15.3■□□□□ 0.04
CUX1-215ENST00000556210 SNUPNO95149 360 aaKnown RBP15.3■□□□□ 0.04
CUX1-215ENST00000556210 POLBP06746 335 aa15.3■□□□□ 0.04
CUX1-215ENST00000556210 ZFXP17010 805 aaPredicted RBP15.3■□□□□ 0.04
CUX1-215ENST00000556210 SERPINB5P36952 375 aa15.3■□□□□ 0.04
CUX1-215ENST00000556210 KPNB1Q14974 876 aaKnown RBP15.3■□□□□ 0.04
CUX1-215ENST00000556210 SERAC1Q96JX3 654 aa15.3■□□□□ 0.04
CUX1-215ENST00000556210 VPS33BQ9H267 617 aa15.3■□□□□ 0.04
CUX1-215ENST00000556210 ABI2Q9NYB9 513 aaPredicted RBP15.3■□□□□ 0.04
CUX1-215ENST00000556210 NENFQ9UMX5 172 aa15.3■□□□□ 0.04
CUX1-215ENST00000556210 SDR42E2A6NKP2 422 aa15.3■□□□□ 0.04
CUX1-215ENST00000556210 EDF1O60869 148 aaKnown RBP15.3■□□□□ 0.04
CUX1-215ENST00000556210 MX2P20592 715 aa15.3■□□□□ 0.04
CUX1-215ENST00000556210 BST2Q10589 180 aaKnown RBP15.3■□□□□ 0.04
CUX1-215ENST00000556210 BLMHQ13867 455 aa15.3■□□□□ 0.04
CUX1-215ENST00000556210 PDK2Q15119 407 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms