RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 MARCH8Q5T0T0 291 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 NPNTQ6UXI9 565 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 FASTKD5Q7L8L6 764 aaKnown RBP12.67□□□□□ -0.38
SHMT2-207ENST00000553837 LRRC6Q86X45 466 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 C12orf29Q8N999 325 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 CMASQ8NFW8 434 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-207ENST00000553837 PPP1R13LQ8WUF5 828 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 HSPH1Q92598 858 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 DGCR14Q96DF8 476 aaKnown RBP12.67□□□□□ -0.38
SHMT2-207ENST00000553837 MRRFQ96E11 262 aaKnown RBP12.67□□□□□ -0.38
SHMT2-207ENST00000553837 HEXIM2Q96MH2 286 aaKnown RBP12.67□□□□□ -0.38
SHMT2-207ENST00000553837 KATNBL1Q9H079 304 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 VRTNQ9H8Y1 702 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 ZDHHC7Q9NXF8 308 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 NME7Q9Y5B8 376 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 A6NJR5 290 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 ASB14A6NK59 587 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 PPEF2O14830 753 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 HNRNPRO43390 633 aaKnown RBP12.67□□□□□ -0.38
SHMT2-207ENST00000553837 TSPAN1O60635 241 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 KRT7P08729 469 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 ADORA2AP29274 412 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 RGS2P41220 211 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 NDST1P52848 882 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 POU5F1BQ06416 359 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 ASPHQ12797 758 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 CBX3Q13185 183 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 LAMC2Q13753 1193 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 EFTUD2Q15029 972 aaKnown RBP eCLIP12.67□□□□□ -0.384e-8■■■■■ 44
SHMT2-207ENST00000553837 C15orf59Q2T9L4 293 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-207ENST00000553837 TMCO4Q5TGY1 634 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 RFX8Q6ZV50 586 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 ADGRG6Q86SQ4 1221 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 ZNF276Q8N554 614 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 NAT8LQ8N9F0 302 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 IRGQQ8WZA9 623 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 ALKBH8Q96BT7 664 aaKnown RBP12.67□□□□□ -0.38
SHMT2-207ENST00000553837 OXNAD1Q96HP4 312 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-207ENST00000553837 MPP4Q96JB8 637 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 TTC1Q99614 292 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 KCNK13Q9HB14 408 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 FBXO6Q9NRD1 293 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-207ENST00000553837 RNF19AQ9NV58 838 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 EFR3BQ9Y2G0 817 aa12.67□□□□□ -0.38
SHMT2-207ENST00000553837 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.67□□□□□ -0.38
SHMT2-207ENST00000553837 PLXNA1Q9UIW2 1896 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 BTBD19C9JJ37 291 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 FCHO1O14526 889 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 GRAP2O75791 330 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 TM7SF2O76062 418 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 TMEM63AO94886 807 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 SPATA31D3P0C874 917 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 GEMIN4P57678 1058 aaKnown RBP12.66□□□□□ -0.38
SHMT2-207ENST00000553837 SULT2A1Q06520 285 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 GRM2Q14416 872 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 TMEM132DQ14C87 1099 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 FAM102AQ5T9C2 384 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-207ENST00000553837 KLC3Q6P597 504 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 AAGABQ6PD74 315 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 RIPOR1Q6ZS17 1223 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 SPATA31D4Q6ZUB0 917 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 RASSF3Q86WH2 238 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 KCTD6Q8NC69 237 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 LPIN3Q9BQK8 851 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 BRD8Q9H0E9 1235 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 TSPYL2Q9H2G4 693 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-207ENST00000553837 EBF3Q9H4W6 596 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 ASB7Q9H672 318 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 PTTG2Q9NZH5 202 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 USP18Q9UMW8 372 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 SHOC2Q9UQ13 582 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 TRIP11Q15643 1979 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 E5RJQ4 531 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 GABBR2O75899 941 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 SNAI1O95863 264 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-207ENST00000553837 DLDP09622 509 aaKnown RBP12.66□□□□□ -0.38
SHMT2-207ENST00000553837 VDRP11473 427 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 SSTR1P30872 391 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 ATICP31939 592 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 TNFAIP2Q03169 654 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 INCA1Q0VD86 236 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 HADHQ16836 314 aaKnown RBP12.66□□□□□ -0.38
SHMT2-207ENST00000553837 FAM183BPQ6ZVS7 135 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 PDSS2Q86YH6 399 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 RFX6Q8HWS3 928 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 FAM71DQ8N9W8 422 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 SHCBP1Q8NEM2 672 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 PPTC7Q8NI37 304 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 TCP10LQ8TDR4 215 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 NLRP7Q8WX94 980 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 RSPH1Q8WYR4 309 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 CATSPER2Q96P56 530 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 ADPGKQ9BRR6 497 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 CYP3A43Q9HB55 503 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 DPP3Q9NY33 737 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 HSFX1Q9UBD0 423 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 FETUBQ9UGM5 382 aa12.66□□□□□ -0.38
SHMT2-207ENST00000553837 BARX2Q9UMQ3 279 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-207ENST00000553837 DCAF8L1A6NGE4 600 aa12.65□□□□□ -0.38
SHMT2-207ENST00000553837 C2CD4BA6NLJ0 364 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms