RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 CC2D1BQ5T0F9 858 aaKnown RBP3.85□□□□□ -1.79
VRK1-202ENST00000553683 CCDC144NLQ6NUI1 221 aa3.85□□□□□ -1.79
VRK1-202ENST00000553683 ACSM6Q6P461 480 aa3.85□□□□□ -1.79
VRK1-202ENST00000553683 FBXO38Q6PIJ6 1188 aa3.85□□□□□ -1.79
VRK1-202ENST00000553683 RASGRP3Q8IV61 690 aa3.85□□□□□ -1.79
VRK1-202ENST00000553683 FAM186BQ8IYM0 893 aa3.85□□□□□ -1.79
VRK1-202ENST00000553683 C16orf52Q8NHV5 167 aa3.85□□□□□ -1.79
VRK1-202ENST00000553683 MPLKIPQ8TAP9 179 aa3.85□□□□□ -1.79
VRK1-202ENST00000553683 SIGLEC11Q96RL6 698 aa3.85□□□□□ -1.79
VRK1-202ENST00000553683 SENP7Q9BQF6 1050 aa3.85□□□□□ -1.79
VRK1-202ENST00000553683 KRTAP17-1Q9BYP8 105 aa3.85□□□□□ -1.79
VRK1-202ENST00000553683 CERS4Q9HA82 394 aa3.85□□□□□ -1.79
VRK1-202ENST00000553683 SAP30LQ9HAJ7 183 aa3.85□□□□□ -1.79
VRK1-202ENST00000553683 KCNK9Q9NPC2 374 aa3.85□□□□□ -1.79
VRK1-202ENST00000553683 NLRC4Q9NPP4 1024 aa3.85□□□□□ -1.79
VRK1-202ENST00000553683 PDGFCQ9NRA1 345 aa3.85□□□□□ -1.79
VRK1-202ENST00000553683 UBE2J1Q9Y385 318 aaPredicted RBP3.85□□□□□ -1.79
VRK1-202ENST00000553683 FAM234BA2RU67 622 aa3.84□□□□□ -1.79
VRK1-202ENST00000553683 KCNU1A8MYU2 1149 aa3.84□□□□□ -1.79
VRK1-202ENST00000553683 PPEF2O14830 753 aa3.84□□□□□ -1.79
VRK1-202ENST00000553683 TP73O15350 636 aa3.84□□□□□ -1.79
VRK1-202ENST00000553683 CTIFO43310 598 aaKnown RBP3.84□□□□□ -1.79
VRK1-202ENST00000553683 NCK2O43639 380 aa3.84□□□□□ -1.79
VRK1-202ENST00000553683 TLR2O60603 784 aa3.84□□□□□ -1.79
VRK1-202ENST00000553683 NDST3O95803 873 aa3.84□□□□□ -1.79
VRK1-202ENST00000553683 SLC3A2P08195 630 aaKnown RBP3.84□□□□□ -1.79
VRK1-202ENST00000553683 PLCD1P51178 756 aa3.84□□□□□ -1.79
VRK1-202ENST00000553683 SLC14A1Q13336 389 aa3.84□□□□□ -1.79
VRK1-202ENST00000553683 CBFBQ13951 182 aa3.84□□□□□ -1.79
VRK1-202ENST00000553683 CSHL1Q14406 222 aa3.84□□□□□ -1.79
VRK1-202ENST00000553683 RAB30Q15771 203 aa3.84□□□□□ -1.79
VRK1-202ENST00000553683 C10orf25Q5T742 122 aa3.84□□□□□ -1.79
VRK1-202ENST00000553683 PAPD7Q5XG87 772 aaKnown RBP3.84□□□□□ -1.79
VRK1-202ENST00000553683 UEVLDQ8IX04 471 aa3.84□□□□□ -1.79
VRK1-202ENST00000553683 ACRBPQ8NEB7 543 aa3.84□□□□□ -1.79
VRK1-202ENST00000553683 TMEM41AQ96HV5 264 aa3.84□□□□□ -1.79
VRK1-202ENST00000553683 ZNF845Q96IR2 970 aaPredicted RBP3.84□□□□□ -1.79
VRK1-202ENST00000553683 ELAC2Q9BQ52 826 aaKnown RBP3.84□□□□□ -1.79
VRK1-202ENST00000553683 SH2D3AQ9BRG2 576 aa3.84□□□□□ -1.79
VRK1-202ENST00000553683 GATA5Q9BWX5 397 aaPredicted RBP3.84□□□□□ -1.79
VRK1-202ENST00000553683 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.84□□□□□ -1.79
VRK1-202ENST00000553683 VPS16Q9H269 839 aa3.84□□□□□ -1.79
VRK1-202ENST00000553683 GJB4Q9NTQ9 266 aa3.84□□□□□ -1.79
VRK1-202ENST00000553683 SLC52A1Q9NWF4 448 aa3.84□□□□□ -1.79
VRK1-202ENST00000553683 PODXLO00592 558 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 INPPL1O15357 1258 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 TMEM191BP0C7N4 346 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 CTSAP10619 480 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 PECAM1P16284 738 aaPredicted RBP3.83□□□□□ -1.8
VRK1-202ENST00000553683 DRD1P21728 446 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 HTR3AP46098 478 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 SLC12A2P55011 1212 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 RAE1P78406 368 aaKnown RBP3.83□□□□□ -1.8
VRK1-202ENST00000553683 ID2Q02363 134 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 HDAC1Q13547 482 aaPredicted RBP3.83□□□□□ -1.8
VRK1-202ENST00000553683 KLF9Q13886 244 aaPredicted RBP3.83□□□□□ -1.8
VRK1-202ENST00000553683 SEC23BQ15437 767 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 SLC9C1Q4G0N8 1177 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 EARS2Q5JPH6 523 aaKnown RBP3.83□□□□□ -1.8
VRK1-202ENST00000553683 IL31Q6EBC2 164 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 RINLQ6ZS11 566 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 PIK3AP1Q6ZUJ8 805 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 CNGA4Q8IV77 575 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 LAS2Q8IYD9 372 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 NRSN1Q8IZ57 195 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 WDR60Q8WVS4 1066 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 ASB12Q8WXK4 309 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 AKAP1Q92667 903 aaKnown RBP eCLIP3.83□□□□□ -1.8
VRK1-202ENST00000553683 HMCESQ96FZ2 354 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 FAR2Q96K12 515 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 FCRL4Q96PJ5 515 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 EIF3CQ99613 913 aaKnown RBP3.83□□□□□ -1.8
VRK1-202ENST00000553683 CDCP1Q9H5V8 836 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 AS3MTQ9HBK9 375 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 ARFGAP3Q9NP61 516 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 ARL8BQ9NVJ2 186 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 KLHL13Q9P2N7 655 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 ZNF335Q9H4Z2 1342 aaPredicted RBP3.83□□□□□ -1.8
VRK1-202ENST00000553683 ZMYM2Q9UBW7 1377 aa3.83□□□□□ -1.8
VRK1-202ENST00000553683 CCDC187A0A096LP49 1063 aa3.82□□□□□ -1.8
VRK1-202ENST00000553683 PNMA6EA0A0J9YXQ4 647 aa3.82□□□□□ -1.8
VRK1-202ENST00000553683 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.82□□□□□ -1.8
VRK1-202ENST00000553683 GOLGA6L3A6NEY3 463 aa3.82□□□□□ -1.8
VRK1-202ENST00000553683 NPC1O15118 1278 aa3.82□□□□□ -1.8
VRK1-202ENST00000553683 PLAUP00749 431 aa3.82□□□□□ -1.8
VRK1-202ENST00000553683 ENO1P06733 434 aaKnown RBP3.82□□□□□ -1.8
VRK1-202ENST00000553683 MYL3P08590 195 aa3.82□□□□□ -1.8
VRK1-202ENST00000553683 SRGAP2BP0DMP2 458 aa3.82□□□□□ -1.8
VRK1-202ENST00000553683 NPPBP16860 134 aa3.82□□□□□ -1.8
VRK1-202ENST00000553683 RPS6KB1P23443 525 aa3.82□□□□□ -1.8
VRK1-202ENST00000553683 ARHGAP25P42331 645 aa3.82□□□□□ -1.8
VRK1-202ENST00000553683 CDK7P50613 346 aa3.82□□□□□ -1.8
VRK1-202ENST00000553683 ZNF84P51523 738 aa3.82□□□□□ -1.8
VRK1-202ENST00000553683 KRTAP10-11P60412 298 aa3.82□□□□□ -1.8
VRK1-202ENST00000553683 SLC2A7Q6PXP3 512 aa3.82□□□□□ -1.8
VRK1-202ENST00000553683 RBM44Q6ZP01 1051 aaKnown RBP3.82□□□□□ -1.8
VRK1-202ENST00000553683 TOGARAM2Q6ZUX3 1019 aa3.82□□□□□ -1.8
VRK1-202ENST00000553683 SRLQ86TD4 932 aa3.82□□□□□ -1.8
VRK1-202ENST00000553683 Q8N9P0 234 aaPredicted RBP3.82□□□□□ -1.8
VRK1-202ENST00000553683 PRR11Q96HE9 360 aaPredicted RBP3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms