RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 BTBD3Q9Y2F9 522 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 KIF3AQ9Y496 699 aa11.1□□□□□ -0.63
VPS29-208ENST00000550267 PI4KAP42356 2102 aa11.09□□□□□ -0.63
VPS29-208ENST00000550267 ZNF233A6NK53 670 aa11.09□□□□□ -0.63
VPS29-208ENST00000550267 A8MXQ7 604 aa11.09□□□□□ -0.63
VPS29-208ENST00000550267 KCNJ18B7U540 433 aa11.09□□□□□ -0.63
VPS29-208ENST00000550267 GFRA2O00451 464 aa11.09□□□□□ -0.63
VPS29-208ENST00000550267 GREM1O60565 184 aa11.09□□□□□ -0.63
VPS29-208ENST00000550267 IGHA1P01876 353 aa11.09□□□□□ -0.63
VPS29-208ENST00000550267 ZNF883P0CG24 379 aa11.09□□□□□ -0.63
VPS29-208ENST00000550267 IDEP14735 1019 aa11.09□□□□□ -0.63
VPS29-208ENST00000550267 PTGIRP43119 386 aa11.09□□□□□ -0.63
VPS29-208ENST00000550267 PGFP49763 221 aa11.09□□□□□ -0.63
VPS29-208ENST00000550267 SLC5A3P53794 718 aa11.09□□□□□ -0.63
VPS29-208ENST00000550267 SRSF11Q05519 484 aaKnown RBP11.09□□□□□ -0.63
VPS29-208ENST00000550267 FUT11Q495W5 492 aa11.09□□□□□ -0.63
VPS29-208ENST00000550267 FOXD4L5Q5VV16 416 aaPredicted RBP11.09□□□□□ -0.63
VPS29-208ENST00000550267 SNX30Q5VWJ9 437 aa11.09□□□□□ -0.63
VPS29-208ENST00000550267 HTR3DQ70Z44 454 aa11.09□□□□□ -0.63
VPS29-208ENST00000550267 TRAPPC11Q7Z392 1133 aa11.09□□□□□ -0.63
VPS29-208ENST00000550267 B3GALNT2Q8NCR0 500 aa11.09□□□□□ -0.63
VPS29-208ENST00000550267 PIP4K2CQ8TBX8 421 aa11.09□□□□□ -0.63
VPS29-208ENST00000550267 SCARF2Q96GP6 870 aaPredicted RBP11.09□□□□□ -0.63
VPS29-208ENST00000550267 UBL7Q96S82 380 aaPredicted RBP11.09□□□□□ -0.63
VPS29-208ENST00000550267 CDC6Q99741 560 aa11.09□□□□□ -0.63
VPS29-208ENST00000550267 NACA2Q9H009 215 aa11.09□□□□□ -0.63
VPS29-208ENST00000550267 ITM2CQ9NQX7 267 aa11.09□□□□□ -0.63
VPS29-208ENST00000550267 OLFML3Q9NRN5 406 aa11.09□□□□□ -0.63
VPS29-208ENST00000550267 USP36Q9P275 1121 aaKnown RBP11.09□□□□□ -0.63
VPS29-208ENST00000550267 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.09□□□□□ -0.63
VPS29-208ENST00000550267 STON1Q9Y6Q2 735 aa11.09□□□□□ -0.63
VPS29-208ENST00000550267 MYOFQ9NZM1 2061 aa11.08□□□□□ -0.63
VPS29-208ENST00000550267 PTPRBP23467 1997 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 A0A1B0GVT2 93 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 ERVH48-1M5A8F1 160 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 BCAT2O15382 392 aaPredicted RBP11.08□□□□□ -0.64
VPS29-208ENST00000550267 FLRT2O43155 660 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 TLR5O60602 858 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 C1QL1O75973 258 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 CISD3P0C7P0 127 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 ZDHHC11BP0C7U3 371 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 GJB2P29033 226 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 ABCG1P45844 678 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 DGKGP49619 791 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 TUBP50607 506 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 TNNC1P63316 161 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 ALCAMQ13740 583 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 SF3A1Q15459 793 aaKnown RBP11.08□□□□□ -0.64
VPS29-208ENST00000550267 SURF1Q15526 300 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 CCDC157Q569K6 752 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 IL27RAQ6UWB1 636 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 DBX2Q6ZNG2 339 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 PAQR9Q6ZVX9 377 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 FAM35AQ86V20 835 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 WDR49Q8IV35 697 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 GALNT15Q8N3T1 639 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 CADM4Q8NFZ8 388 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 BHMTQ93088 406 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 KIF2CQ99661 725 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 MED10Q9BTT4 135 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 MKRN2Q9H000 416 aaKnown RBP11.08□□□□□ -0.64
VPS29-208ENST00000550267 PLK2Q9NYY3 685 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 IL37Q9NZH6 218 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 MARK1Q9P0L2 795 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 WDR35Q9P2L0 1181 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 EIF2B4Q9UI10 523 aaKnown RBP11.08□□□□□ -0.64
VPS29-208ENST00000550267 NFE2L3Q9Y4A8 694 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 SLCO1B1Q9Y6L6 691 aa11.08□□□□□ -0.64
VPS29-208ENST00000550267 SETXQ7Z333 2677 aaKnown RBP11.08□□□□□ -0.64
VPS29-208ENST00000550267 METTL12A8MUP2 240 aa11.07□□□□□ -0.64
VPS29-208ENST00000550267 TBX18O95935 607 aa11.07□□□□□ -0.64
VPS29-208ENST00000550267 BMP15O95972 392 aa11.07□□□□□ -0.64
VPS29-208ENST00000550267 FAM163BP0C2L3 166 aa11.07□□□□□ -0.64
VPS29-208ENST00000550267 DLATP10515 647 aaKnown RBP11.07□□□□□ -0.64
VPS29-208ENST00000550267 ITPKBP27987 946 aa11.07□□□□□ -0.64
VPS29-208ENST00000550267 STARD3Q14849 445 aa11.07□□□□□ -0.64
VPS29-208ENST00000550267 WDR72Q3MJ13 1102 aa11.07□□□□□ -0.64
VPS29-208ENST00000550267 RRAGBQ5VZM2 374 aa11.07□□□□□ -0.64
VPS29-208ENST00000550267 SV2BQ7L1I2 683 aa11.07□□□□□ -0.64
VPS29-208ENST00000550267 LYSMD3Q7Z3D4 306 aa11.07□□□□□ -0.64
VPS29-208ENST00000550267 CACUL1Q86Y37 369 aa11.07□□□□□ -0.64
VPS29-208ENST00000550267 P2RY11Q96G91 374 aa11.07□□□□□ -0.64
VPS29-208ENST00000550267 DMAP1Q9NPF5 467 aaPredicted RBP11.07□□□□□ -0.64
VPS29-208ENST00000550267 HSPBP1Q9NZL4 362 aa11.07□□□□□ -0.64
VPS29-208ENST00000550267 CCDC39Q9UFE4 941 aa11.07□□□□□ -0.64
VPS29-208ENST00000550267 LSM7Q9UK45 103 aaKnown RBP11.07□□□□□ -0.64
VPS29-208ENST00000550267 PCDHGB2Q9Y5G2 931 aa11.07□□□□□ -0.64
VPS29-208ENST00000550267 ATP8B3O60423 1300 aa11.07□□□□□ -0.64
VPS29-208ENST00000550267 FAM92AA1XBS5 289 aa11.06□□□□□ -0.64
VPS29-208ENST00000550267 FRMD3A2A2Y4 597 aa11.06□□□□□ -0.64
VPS29-208ENST00000550267 ESPNB1AK53 854 aa11.06□□□□□ -0.64
VPS29-208ENST00000550267 PLK4O00444 970 aa11.06□□□□□ -0.64
VPS29-208ENST00000550267 KIAA0391O15091 583 aaKnown RBP11.06□□□□□ -0.64
VPS29-208ENST00000550267 EIF5BO60841 1220 aaKnown RBP11.06□□□□□ -0.64
VPS29-208ENST00000550267 AP1G2O75843 785 aa11.06□□□□□ -0.64
VPS29-208ENST00000550267 TNNI1P19237 187 aa11.06□□□□□ -0.64
VPS29-208ENST00000550267 IL12RB1P42701 662 aa11.06□□□□□ -0.64
VPS29-208ENST00000550267 CSNK1EP49674 416 aaKnown RBP11.06□□□□□ -0.64
VPS29-208ENST00000550267 TPMTP51580 245 aa11.06□□□□□ -0.64
VPS29-208ENST00000550267 CDH8P55286 799 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms