RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 MTAPQ13126 283 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 ACOX1Q15067 660 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 TXNRD1Q16881 649 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 FBXO47Q5MNV8 452 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 GRHL2Q6ISB3 625 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 MSANTD2Q6P1R3 559 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 NFRKBQ6P4R8 1299 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 PIK3AP1Q6ZUJ8 805 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 RAB11FIP2Q7L804 512 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 KRT27Q7Z3Y8 459 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 GRASPQ7Z6J2 395 aaPredicted RBP4.71□□□□□ -1.66
VPS29-205ENST00000548539 LRRC71Q8N4P6 559 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 SLC22A17Q8WUG5 538 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 HMGB4Q8WW32 186 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 GOLGA1Q92805 767 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 WDYHV1Q96HA8 205 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 PGBD1Q96JS3 809 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 PRR25Q96S07 402 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 EIF3CQ99613 913 aaKnown RBP4.71□□□□□ -1.66
VPS29-205ENST00000548539 PYM1Q9BRP8 204 aaKnown RBP4.71□□□□□ -1.66
VPS29-205ENST00000548539 DDX23Q9BUQ8 820 aaKnown RBP4.71□□□□□ -1.66
VPS29-205ENST00000548539 MECRQ9BV79 373 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 KLC4Q9NSK0 619 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 EHD3Q9NZN3 535 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 ASAP1Q9ULH1 1129 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 CNTN6Q9UQ52 1028 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 PCDHB7Q9Y5E2 793 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 CGB1A6NKQ9 187 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 M0QYT0 321 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 CA12O43570 354 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 SPRY2O43597 315 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 FAM155BO75949 473 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 ALADP13716 330 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 CD19P15391 556 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 ZFXP17010 805 aaPredicted RBP4.7□□□□□ -1.66
VPS29-205ENST00000548539 AARSP49588 968 aaKnown RBP eCLIP4.7□□□□□ -1.66
VPS29-205ENST00000548539 E2F1Q01094 437 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 SF3A3Q12874 501 aaKnown RBP eCLIP4.7□□□□□ -1.66
VPS29-205ENST00000548539 CLCA4Q14CN2 919 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 RALBP1Q15311 655 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 CYP1B1Q16678 543 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 ZNF618Q5T7W0 954 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 TEDDM1Q5T9Z0 273 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 JAKMIP3Q5VZ66 844 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 ZNF425Q6IV72 752 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 TMED8Q6PL24 325 aaPredicted RBP4.7□□□□□ -1.66
VPS29-205ENST00000548539 SYNE3Q6ZMZ3 975 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 SYT13Q7L8C5 426 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 OR6Y1Q8NGX8 325 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 SPPL3Q8TCT6 385 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 ASB12Q8WXK4 309 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 THAP4Q8WY91 577 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 COG8Q96MW5 612 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 NUDT22Q9BRQ3 303 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 ALG8Q9BVK2 526 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 UBA5Q9GZZ9 404 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 CCDC134Q9H6E4 229 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 RIC8AQ9NPQ8 531 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 IFT80Q9P2H3 777 aaPredicted RBP4.7□□□□□ -1.66
VPS29-205ENST00000548539 ZNF70Q9UC06 446 aaPredicted RBP4.7□□□□□ -1.66
VPS29-205ENST00000548539 KCND3Q9UK17 655 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 C19orf53Q9UNZ5 99 aaPredicted RBP4.7□□□□□ -1.66
VPS29-205ENST00000548539 PCDHB2Q9Y5E7 798 aa4.7□□□□□ -1.66
VPS29-205ENST00000548539 ARHGEF17Q96PE2 2063 aaPredicted RBP4.69□□□□□ -1.66
VPS29-205ENST00000548539 WDR91A4D1P6 747 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 TISP43B9A030 160 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 E7EVH7 732 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 EYA2O00167 538 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 CES2O00748 559 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 MGST3O14880 152 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 PMPCBO75439 489 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 PRKCBP05771 671 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 CREB1P16220 341 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 ENGP17813 658 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 GKP32189 559 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 MCM5P33992 734 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 PAPOLAP51003 745 aaKnown RBP4.69□□□□□ -1.66
VPS29-205ENST00000548539 TPTEP56180 551 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 RNASELQ05823 741 aaKnown RBP4.69□□□□□ -1.66
VPS29-205ENST00000548539 DEUP1Q05D60 604 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 PDCLQ13371 301 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 FAM110CQ1W6H9 321 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 TRIM60Q495X7 471 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 GALNTL6Q49A17 601 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 AASDHQ4L235 1098 aaPredicted RBP4.69□□□□□ -1.66
VPS29-205ENST00000548539 TTC22Q5TAA0 569 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 ANKRD40Q6AI12 368 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 CCDC144NLQ6NUI1 221 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 Q6ZNX1 250 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 TRABD2AQ86V40 505 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 LRRTM4Q86VH4 590 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 RAB11FIP4Q86YS3 637 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 CPOQ8IVL8 374 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 HERC6Q8IVU3 1022 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 CEP70Q8NHQ1 597 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 RSC1A1Q92681 617 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 USP13Q92995 863 aaPredicted RBP4.69□□□□□ -1.66
VPS29-205ENST00000548539 RFKQ969G6 155 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 PRR11Q96HE9 360 aaPredicted RBP4.69□□□□□ -1.66
VPS29-205ENST00000548539 PBKQ96KB5 322 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms