RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 RAP1GAPP47736 663 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 PDE1BQ01064 536 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 INSCQ1MX18 579 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 TEDDM1Q5T9Z0 273 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 RASIP1Q5U651 963 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 RASSF3Q86WH2 238 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 TTC39CQ8N584 583 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 GSTCDQ8NEC7 633 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 AFG1LQ8WV93 481 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 RXFP2Q8WXD0 754 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 PCYT2Q99447 389 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 ELOVL4Q9GZR5 314 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 EBF3Q9H4W6 596 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 ZNF395Q9H8N7 513 aaPredicted RBP9.04□□□□□ -0.96
TDP1-204ENST00000545686 UGT1A7Q9HAW7 530 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 UGT1A10Q9HAW8 530 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 UGT1A8Q9HAW9 530 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 PCDH18Q9HCL0 1135 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 PTPRFP10586 1907 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 MEI4A8MW99 385 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 SIN3BO75182 1162 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 USP1O94782 785 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 MLNP12872 115 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 CCDC130P13994 396 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 PDGFRAP16234 1089 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 ZFXP17010 805 aaPredicted RBP9.04□□□□□ -0.96
TDP1-204ENST00000545686 IL4RP24394 825 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 SLC1A6P48664 564 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 STAT5BP51692 787 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 DEUP1Q05D60 604 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 LAMTOR4Q0VGL1 99 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 SEMA5AQ13591 1074 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 CCNIQ14094 377 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 TMEM132BQ14DG7 1078 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 SYCP2LQ5T4T6 812 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 MROH9Q5TGP6 573 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 EGFL6Q8IUX8 553 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 PPP4R1Q8TF05 950 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 ZNF778Q96MU6 729 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 MYOZ2Q9NPC6 264 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 DCDC2Q9UHG0 476 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 SIX4Q9UIU6 781 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 CDH22Q9UJ99 828 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 KIAA1257Q9ULG3 409 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 DNAJC16Q9Y2G8 782 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 ZNF638Q14966 1978 aaKnown RBP9.03□□□□□ -0.96
TDP1-204ENST00000545686 ARHGAP42A6NI28 874 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 ACKR2O00590 384 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 PLIN3O60664 434 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 FARP2O94887 1054 aaPredicted RBP9.03□□□□□ -0.96
TDP1-204ENST00000545686 UBA1P22314 1058 aaKnown RBP9.03□□□□□ -0.96
TDP1-204ENST00000545686 NR2C2P49116 596 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 HIRAP54198 1017 aaPredicted RBP9.03□□□□□ -0.96
TDP1-204ENST00000545686 NIPAL4Q0D2K0 466 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 STILQ15468 1287 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 FAXCQ5TGI0 409 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 TRNP1Q6NT89 227 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 TRMT10BQ6PF06 316 aaKnown RBP9.03□□□□□ -0.96
TDP1-204ENST00000545686 POTEAQ6S8J7 498 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 PCDH19Q8TAB3 1148 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 CDKL2Q92772 493 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 QKIQ96PU8 341 aaKnown RBP eCLIP9.03□□□□□ -0.967e-10■■■■■ 43.3
TDP1-204ENST00000545686 TWNKQ96RR1 684 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 DDX50Q9BQ39 737 aaKnown RBP9.03□□□□□ -0.96
TDP1-204ENST00000545686 APOL6Q9BWW8 343 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 SMYD3Q9H7B4 428 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 RPF1Q9H9Y2 349 aaKnown RBP9.03□□□□□ -0.96
TDP1-204ENST00000545686 EMCNQ9ULC0 261 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 HEY1Q9Y5J3 304 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 MAD1L1Q9Y6D9 718 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 KRT19P08727 400 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 SLC25A3Q00325 362 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 INCA1Q0VD86 236 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 LSAMPQ13449 338 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 LAMB3Q13751 1172 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 PCLAFQ15004 111 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 C15orf59Q2T9L4 293 aaPredicted RBP9.03□□□□□ -0.96
TDP1-204ENST00000545686 ANKRD20A4Q4UJ75 823 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 CFAP157Q5JU67 520 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 ATF7IP2Q5U623 682 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 LCLAT1Q6UWP7 414 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 ZCCHC23Q6ZST2 131 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 FAM183BPQ6ZVS7 135 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 ARHGAP22Q7Z5H3 698 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 NIM1KQ8IY84 436 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 SLC25A41Q8N5S1 370 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 C1orf127Q8N9H9 656 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 ZNF280CQ8ND82 737 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 KCNK16Q96T55 309 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 IFT122Q9HBG6 1241 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 GBA2Q9HCG7 927 aaPredicted RBP9.03□□□□□ -0.96
TDP1-204ENST00000545686 MORF4L1Q9UBU8 362 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 HMGXB4Q9UGU5 601 aa9.03□□□□□ -0.96
TDP1-204ENST00000545686 TNS1Q9HBL0 1735 aaKnown RBP9.02□□□□□ -0.96
TDP1-204ENST00000545686 IGKV6-21A0A0C4DH24 114 aa9.02□□□□□ -0.97
TDP1-204ENST00000545686 FDFT1P37268 417 aa9.02□□□□□ -0.97
TDP1-204ENST00000545686 HARS2P49590 506 aaKnown RBP9.02□□□□□ -0.97
TDP1-204ENST00000545686 IDH3AP50213 366 aa9.02□□□□□ -0.97
TDP1-204ENST00000545686 CDH8P55286 799 aa9.02□□□□□ -0.97
TDP1-204ENST00000545686 MSLNQ13421 630 aaPredicted RBP9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms