RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 RPS3AP61247 264 aaKnown RBP5.44□□□□□ -1.54
USP28-213ENST00000544967 SP2Q02086 613 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 DNAJC3Q13217 504 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 CEP55Q53EZ4 464 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 EFHC2Q5JST6 749 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 RIPOR1Q6ZS17 1223 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 PLPPR4Q7Z2D5 763 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 HAUS6Q7Z4H7 955 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 ARPINQ7Z6K5 226 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 MTDHQ86UE4 582 aaKnown RBP5.44□□□□□ -1.54
USP28-213ENST00000544967 CMTR1Q8N1G2 835 aaKnown RBP5.44□□□□□ -1.54
USP28-213ENST00000544967 PPHLN1Q8NEY8 458 aaKnown RBP5.44□□□□□ -1.54
USP28-213ENST00000544967 BORCS5Q969J3 196 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 CNDP2Q96KP4 475 aaKnown RBP5.44□□□□□ -1.54
USP28-213ENST00000544967 HGH1Q9BTY7 390 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 OSBPL6Q9BZF3 934 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 HACD3Q9P035 362 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 IGSF9Q9P2J2 1179 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 PSMC3IPQ9P2W1 217 aaPredicted RBP5.44□□□□□ -1.54
USP28-213ENST00000544967 PCDHGB7Q9Y5F8 929 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 A0A0B4J203 849 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 MBLAC1A4D2B0 266 aaPredicted RBP5.44□□□□□ -1.54
USP28-213ENST00000544967 SMIM23A6NLE4 172 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 PP2D1A8MPX8 630 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 SPECC1L-ADORA2AF8WAN1 911 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 OPHN1O60890 802 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 AGR2O95994 175 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 ATF2P15336 505 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 CREB1P16220 341 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 ZNF23P17027 643 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 KRT15P19012 456 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 AOC1P19801 751 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 TTKP33981 857 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 PPIDQ08752 370 aaKnown RBP5.44□□□□□ -1.54
USP28-213ENST00000544967 MSLNQ13421 630 aaPredicted RBP5.44□□□□□ -1.54
USP28-213ENST00000544967 LAMC2Q13753 1193 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 FAM26DQ5JW98 314 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 WDR45BQ5MNZ6 344 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 KRT79Q5XKE5 535 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 PGM2L1Q6PCE3 622 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 FIP1L1Q6UN15 594 aaKnown RBP5.44□□□□□ -1.54
USP28-213ENST00000544967 RBM44Q6ZP01 1051 aaKnown RBP5.44□□□□□ -1.54
USP28-213ENST00000544967 HEATR3Q7Z4Q2 680 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 SATL1Q86VE3 508 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 SRRM1Q8IYB3 904 aaKnown RBP5.44□□□□□ -1.54
USP28-213ENST00000544967 ULK2Q8IYT8 1036 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 RBM15BQ8NDT2 890 aaKnown RBP5.44□□□□□ -1.54
USP28-213ENST00000544967 ADAMTS16Q8TE57 1224 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 U2AF1L4Q8WU68 220 aaKnown RBP5.44□□□□□ -1.54
USP28-213ENST00000544967 HAS1Q92839 578 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 OXNAD1Q96HP4 312 aaPredicted RBP5.44□□□□□ -1.54
USP28-213ENST00000544967 CDK5RAP3Q96JB5 506 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 PANX3Q96QZ0 392 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 GPR20Q99678 358 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 C16orf70Q9BSU1 422 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 EBF3Q9H4W6 596 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 TBC1D23Q9NUY8 699 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 PCDH10Q9P2E7 1040 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 ZNF69Q9UC07 566 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 ZMAT5Q9UDW3 170 aaKnown RBP5.44□□□□□ -1.54
USP28-213ENST00000544967 BCAP29Q9UHQ4 241 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 GNPTGQ9UJJ9 305 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 IPPQ9Y573 584 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.44□□□□□ -1.54
USP28-213ENST00000544967 LINC00854A0A1B0GVQ3 168 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 SLC22A1O15245 554 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 CYP1A2P05177 515 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 RPLP2P05387 115 aaKnown RBP5.44□□□□□ -1.54
USP28-213ENST00000544967 MMP3P08254 477 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 DLDP09622 509 aaKnown RBP5.44□□□□□ -1.54
USP28-213ENST00000544967 GCAP28676 217 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 PHKA2P46019 1235 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 GPC5P78333 572 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 PURAQ00577 322 aaKnown RBP5.44□□□□□ -1.54
USP28-213ENST00000544967 TTLL4Q14679 1199 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 PRKD1Q15139 912 aaPredicted RBP5.44□□□□□ -1.54
USP28-213ENST00000544967 ALFQ53S48 1182 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 EFHC1Q5JVL4 640 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 ZFP1Q6P2D0 407 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 ABHD15Q6UXT9 468 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 AGMOQ6ZNB7 445 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 CYP4X1Q8N118 509 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 ADCY4Q8NFM4 1077 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 CHPT1Q8WUD6 406 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 WWP1Q9H0M0 922 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 KCNK13Q9HB14 408 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 PARVBQ9HBI1 364 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 TBC1D22BQ9NU19 505 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 TBC1D7Q9P0N9 293 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 RSL24D1Q9UHA3 163 aaKnown RBP5.44□□□□□ -1.54
USP28-213ENST00000544967 SNX5Q9Y5X3 404 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 CEPT1Q9Y6K0 416 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 ANK1P16157 1881 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 EIF3DO15371 548 aaKnown RBP eCLIP5.43□□□□□ -1.54
USP28-213ENST00000544967 SUPT3HO75486 399 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 ELNP15502 786 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 CDH2P19022 906 aaPredicted RBP5.43□□□□□ -1.54
USP28-213ENST00000544967 FDFT1P37268 417 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 KRT17Q04695 432 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 VAC14Q08AM6 782 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms