RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 TRIM49CP0CI26 452 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 CCND1P24385 295 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 POLR2BP30876 1174 aaKnown RBP5.43□□□□□ -1.54
CLIP1-217ENST00000543205 HOXC13P31276 330 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 GRIA2P42262 883 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 TAF6P49848 677 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 DLG4P78352 724 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 WASHC5Q12768 1159 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 SMC1AQ14683 1233 aaKnown RBP5.43□□□□□ -1.54
CLIP1-217ENST00000543205 LRRC14Q15048 493 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 USP41Q3LFD5 358 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 ANO6Q4KMQ2 910 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 FAM171A1Q5VUB5 890 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 KIAA1211LQ6NV74 962 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 LLGL2Q6P1M3 1020 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 DSTYKQ6XUX3 929 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 C11orf57Q6ZUT1 292 aaPredicted RBP5.43□□□□□ -1.54
CLIP1-217ENST00000543205 CHST15Q7LFX5 561 aaPredicted RBP5.43□□□□□ -1.54
CLIP1-217ENST00000543205 TAS1R1Q7RTX1 841 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 TRAPPC11Q7Z392 1133 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 NDUFAF2Q8N183 169 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 TMEM130Q8N3G9 435 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 NAXEQ8NCW5 288 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 PLEKHO2Q8TD55 490 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 MYLIPQ8WY64 445 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 MRPL38Q96DV4 380 aaKnown RBP5.43□□□□□ -1.54
CLIP1-217ENST00000543205 PPM1MQ96MI6 270 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 TCF25Q9BQ70 676 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 HERC2P3Q9BVR0 1158 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 AP1M1Q9BXS5 423 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 GPR62Q9BZJ7 368 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 SLC13A1Q9BZW2 595 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 MIR1-1HGQ9H1L0 117 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 THAP9Q9H5L6 903 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 MMRN2Q9H8L6 949 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 LMCD1Q9NZU5 365 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 ACAD8Q9UKU7 415 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 SSX2IPQ9Y2D8 614 aa5.43□□□□□ -1.54
CLIP1-217ENST00000543205 PTPRJQ12913 1337 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 A0A1B0GVC2 190 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 ARHGEF37A1IGU5 675 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 I3L4J1 428 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 PPEF2O14830 753 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 CPP00450 1065 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 C4BPAP04003 597 aaKnown RBP5.42□□□□□ -1.54
CLIP1-217ENST00000543205 FURINP09958 794 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 FOSL2P15408 326 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 DNAJB1P25685 340 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 GTF2H1P32780 548 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 MTIF2P46199 727 aaKnown RBP5.42□□□□□ -1.54
CLIP1-217ENST00000543205 BRCC3P46736 316 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 GCLMP48507 274 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 GLUD2P49448 558 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 LILRA4P59901 499 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 ERVFC1P60507 584 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 MPP1Q00013 466 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 ZNF252P-AS1Q0IIN9 211 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 SV2CQ496J9 727 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 TIGD5Q53EQ6 642 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 HP1BP3Q5SSJ5 553 aaPredicted RBP5.42□□□□□ -1.54
CLIP1-217ENST00000543205 TDRD10Q5VZ19 366 aaKnown RBP5.42□□□□□ -1.54
CLIP1-217ENST00000543205 KIAA1614Q5VZ46 1190 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 PLPP4Q5VZY2 271 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 KRT39Q6A163 491 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 SPOCD1Q6ZMY3 1216 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 GPR155Q7Z3F1 870 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 PDZD3Q86UT5 571 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 LRRC52Q8N7C0 313 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 CCDC150Q8NCX0 1101 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 APPL2Q8NEU8 664 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 MAFAQ8NHW3 353 aaPredicted RBP5.42□□□□□ -1.54
CLIP1-217ENST00000543205 ATRIPQ8WXE1 791 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 PPP2R3CQ969Q6 453 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 BORCS6Q96GS4 357 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 HPDLQ96IR7 371 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 FAM84AQ96KN4 292 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 CNOT6LQ96LI5 555 aaKnown RBP5.42□□□□□ -1.54
CLIP1-217ENST00000543205 TAAR9Q96RI9 348 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 MED15Q96RN5 788 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 TTPALQ9BTX7 342 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 APOL5Q9BWW9 433 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 VN1R3Q9BXE9 311 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 ZBP1Q9H171 429 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 TMEM8AQ9HCN3 771 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 MRPL17Q9NRX2 175 aaKnown RBP5.42□□□□□ -1.54
CLIP1-217ENST00000543205 RAPGEFL1Q9UHV5 662 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 SIX4Q9UIU6 781 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 NFE2L3Q9Y4A8 694 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 PCDHGB6Q9Y5F9 930 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.42□□□□□ -1.54
CLIP1-217ENST00000543205 TDRD15B5MCY1 1934 aaKnown RBP5.42□□□□□ -1.54
CLIP1-217ENST00000543205 CITO14578 2027 aa5.42□□□□□ -1.54
CLIP1-217ENST00000543205 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.41□□□□□ -1.54
CLIP1-217ENST00000543205 LRRC10BA6NIK2 292 aa5.41□□□□□ -1.54
CLIP1-217ENST00000543205 ZNF891A8MT65 544 aaPredicted RBP5.41□□□□□ -1.54
CLIP1-217ENST00000543205 SMTNL1A8MU46 457 aa5.41□□□□□ -1.54
CLIP1-217ENST00000543205 BECN2A8MW95 431 aa5.41□□□□□ -1.54
CLIP1-217ENST00000543205 KPNA7A9QM74 516 aa5.41□□□□□ -1.54
CLIP1-217ENST00000543205 C9orf172C9J069 976 aa5.41□□□□□ -1.54
CLIP1-217ENST00000543205 H7C4K7 107 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms