RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 PNPLA8Q9NP80 782 aa18.73■□□□□ 0.59
CLSTN3-214ENST00000542663 DKK4Q9UBT3 224 aa18.73■□□□□ 0.59
CLSTN3-214ENST00000542663 NAGPAQ9UK23 515 aa18.73■□□□□ 0.59
CLSTN3-214ENST00000542663 CLEC4EQ9ULY5 219 aa18.73■□□□□ 0.59
CLSTN3-214ENST00000542663 COL5A1P20908 1838 aaPredicted RBP18.72■□□□□ 0.59
CLSTN3-214ENST00000542663 P4HA1P13674 534 aa18.72■□□□□ 0.59
CLSTN3-214ENST00000542663 PRKCHP24723 683 aa18.72■□□□□ 0.59
CLSTN3-214ENST00000542663 OXTRP30559 389 aa18.72■□□□□ 0.59
CLSTN3-214ENST00000542663 INCA1Q0VD86 236 aa18.72■□□□□ 0.59
CLSTN3-214ENST00000542663 CUL4BQ13620 913 aa18.72■□□□□ 0.59
CLSTN3-214ENST00000542663 CCDC186Q7Z3E2 898 aa18.72■□□□□ 0.59
CLSTN3-214ENST00000542663 CACUL1Q86Y37 369 aa18.72■□□□□ 0.59
CLSTN3-214ENST00000542663 PRCCQ92733 491 aaPredicted RBP18.72■□□□□ 0.59
CLSTN3-214ENST00000542663 SCUBE2Q9NQ36 999 aa18.72■□□□□ 0.59
CLSTN3-214ENST00000542663 BTBD3Q9Y2F9 522 aa18.72■□□□□ 0.59
CLSTN3-214ENST00000542663 PCDHGB2Q9Y5G2 931 aa18.72■□□□□ 0.59
CLSTN3-214ENST00000542663 A0A1B0GVT2 93 aa18.71■□□□□ 0.59
CLSTN3-214ENST00000542663 PVALEFA0A1B0GWK0 134 aa18.71■□□□□ 0.59
CLSTN3-214ENST00000542663 POLR2DO15514 142 aaKnown RBP18.71■□□□□ 0.59
CLSTN3-214ENST00000542663 RPN1P04843 607 aaKnown RBP18.71■□□□□ 0.59
CLSTN3-214ENST00000542663 CHKAP35790 457 aa18.71■□□□□ 0.59
CLSTN3-214ENST00000542663 PSEN1P49768 467 aa18.71■□□□□ 0.59
CLSTN3-214ENST00000542663 C1orf220Q5T0J3 134 aa18.71■□□□□ 0.59
CLSTN3-214ENST00000542663 TMEM215Q68D42 235 aa18.71■□□□□ 0.59
CLSTN3-214ENST00000542663 IL27RAQ6UWB1 636 aa18.71■□□□□ 0.59
CLSTN3-214ENST00000542663 SV2AQ7L0J3 742 aa18.71■□□□□ 0.59
CLSTN3-214ENST00000542663 RHBDD1Q8TEB9 315 aa18.71■□□□□ 0.59
CLSTN3-214ENST00000542663 TMEM174Q8WUU8 243 aa18.71■□□□□ 0.59
CLSTN3-214ENST00000542663 SORCS1Q8WY21 1168 aa18.71■□□□□ 0.59
CLSTN3-214ENST00000542663 TAF4BQ92750 862 aa18.71■□□□□ 0.59
CLSTN3-214ENST00000542663 NUP58Q9BVL2 599 aa18.71■□□□□ 0.59
CLSTN3-214ENST00000542663 MAGEF1Q9HAY2 307 aa18.71■□□□□ 0.59
CLSTN3-214ENST00000542663 ELOVL2Q9NXB9 296 aa18.71■□□□□ 0.59
CLSTN3-214ENST00000542663 ZNF510Q9Y2H8 683 aa18.71■□□□□ 0.59
CLSTN3-214ENST00000542663 USP3Q9Y6I4 520 aa18.71■□□□□ 0.59
CLSTN3-214ENST00000542663 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.7■□□□□ 0.58
CLSTN3-214ENST00000542663 FLRT2O43155 660 aa18.7■□□□□ 0.58
CLSTN3-214ENST00000542663 STX6O43752 255 aa18.7■□□□□ 0.58
CLSTN3-214ENST00000542663 CUTAO60888 179 aa18.7■□□□□ 0.58
CLSTN3-214ENST00000542663 HLA-DRAP01903 254 aa18.7■□□□□ 0.58
CLSTN3-214ENST00000542663 CORO1AP31146 461 aaKnown RBP18.7■□□□□ 0.58
CLSTN3-214ENST00000542663 CSNK1EP49674 416 aaKnown RBP18.7■□□□□ 0.58
CLSTN3-214ENST00000542663 CAMK2BQ13554 666 aa18.7■□□□□ 0.58
CLSTN3-214ENST00000542663 ANKS1BQ7Z6G8 1248 aa18.7■□□□□ 0.58
CLSTN3-214ENST00000542663 FAM124AQ86V42 546 aa18.7■□□□□ 0.58
CLSTN3-214ENST00000542663 SLC9A9Q8IVB4 645 aa18.7■□□□□ 0.58
CLSTN3-214ENST00000542663 KIAA0895Q8NCT3 520 aa18.7■□□□□ 0.58
CLSTN3-214ENST00000542663 GOLGA5Q8TBA6 731 aa18.7■□□□□ 0.58
CLSTN3-214ENST00000542663 UCMAQ8WVF2 138 aa18.7■□□□□ 0.58
CLSTN3-214ENST00000542663 LRIG1Q96JA1 1093 aa18.7■□□□□ 0.58
CLSTN3-214ENST00000542663 BACH2Q9BYV9 841 aa18.7■□□□□ 0.58
CLSTN3-214ENST00000542663 CLIC5Q9NZA1 410 aa18.7■□□□□ 0.58
CLSTN3-214ENST00000542663 RASAL2Q9UJF2 1139 aa18.7■□□□□ 0.58
CLSTN3-214ENST00000542663 AGO1Q9UL18 857 aaKnown RBP18.7■□□□□ 0.58
CLSTN3-214ENST00000542663 KLRC4O43908 158 aa18.69■□□□□ 0.58
CLSTN3-214ENST00000542663 SYNCRIPO60506 623 aaKnown RBP18.69■□□□□ 0.58
CLSTN3-214ENST00000542663 HMBSP08397 361 aa18.69■□□□□ 0.58
CLSTN3-214ENST00000542663 AFMP43652 599 aa18.69■□□□□ 0.58
CLSTN3-214ENST00000542663 STK4Q13043 487 aa18.69■□□□□ 0.58
CLSTN3-214ENST00000542663 GRAMD1CQ8IYS0 662 aa18.69■□□□□ 0.58
CLSTN3-214ENST00000542663 TMC2Q8TDI7 906 aa18.69■□□□□ 0.58
CLSTN3-214ENST00000542663 CDC6Q99741 560 aa18.69■□□□□ 0.58
CLSTN3-214ENST00000542663 NT5C1AQ9BXI3 368 aa18.69■□□□□ 0.58
CLSTN3-214ENST00000542663 KCTD10Q9H3F6 313 aa18.69■□□□□ 0.58
CLSTN3-214ENST00000542663 C6orf106Q9H6K1 298 aaPredicted RBP18.69■□□□□ 0.58
CLSTN3-214ENST00000542663 APOBEC3GQ9HC16 384 aaKnown RBP18.69■□□□□ 0.58
CLSTN3-214ENST00000542663 GOLGA8CPA6NN73 597 aa18.68■□□□□ 0.58
CLSTN3-214ENST00000542663 YEATS4O95619 227 aa18.68■□□□□ 0.58
CLSTN3-214ENST00000542663 EPHX1P07099 455 aa18.68■□□□□ 0.58
CLSTN3-214ENST00000542663 C7P10643 843 aa18.68■□□□□ 0.58
CLSTN3-214ENST00000542663 RALAP11233 206 aa18.68■□□□□ 0.58
CLSTN3-214ENST00000542663 ACADMP11310 421 aa18.68■□□□□ 0.58
CLSTN3-214ENST00000542663 ACSL1P33121 698 aa18.68■□□□□ 0.58
CLSTN3-214ENST00000542663 PIK3CAP42336 1068 aa18.68■□□□□ 0.58
CLSTN3-214ENST00000542663 COG7P83436 770 aa18.68■□□□□ 0.58
CLSTN3-214ENST00000542663 CYP4F3Q08477 520 aa18.68■□□□□ 0.58
CLSTN3-214ENST00000542663 EFEMP1Q12805 493 aa18.68■□□□□ 0.58
CLSTN3-214ENST00000542663 EIF4HQ15056 248 aaKnown RBP18.68■□□□□ 0.58
CLSTN3-214ENST00000542663 KIF19Q2TAC6 998 aa18.68■□□□□ 0.58
CLSTN3-214ENST00000542663 PPP1R26Q5T8A7 1209 aaPredicted RBP18.68■□□□□ 0.58
CLSTN3-214ENST00000542663 TADA2BQ86TJ2 420 aa18.68■□□□□ 0.58
CLSTN3-214ENST00000542663 DENND1CQ8IV53 801 aa18.68■□□□□ 0.58
CLSTN3-214ENST00000542663 CPXM2Q8N436 756 aa18.68■□□□□ 0.58
CLSTN3-214ENST00000542663 CRELD1Q96HD1 420 aa18.68■□□□□ 0.58
CLSTN3-214ENST00000542663 INTS4Q96HW7 963 aaKnown RBP18.68■□□□□ 0.58
CLSTN3-214ENST00000542663 DUSP16Q9BY84 665 aa18.68■□□□□ 0.58
CLSTN3-214ENST00000542663 DCLK3Q9C098 648 aa18.68■□□□□ 0.58
CLSTN3-214ENST00000542663 PCED1AQ9H1Q7 454 aa18.68■□□□□ 0.58
CLSTN3-214ENST00000542663 FOXD4L1Q9NU39 408 aa18.68■□□□□ 0.58
CLSTN3-214ENST00000542663 SNX11Q9Y5W9 270 aa18.68■□□□□ 0.58
CLSTN3-214ENST00000542663 TRABD2BA6NFA1 517 aa18.67■□□□□ 0.58
CLSTN3-214ENST00000542663 IKBKBO14920 756 aa18.67■□□□□ 0.58
CLSTN3-214ENST00000542663 HLA-EP13747 358 aa18.67■□□□□ 0.58
CLSTN3-214ENST00000542663 AFF3P51826 1226 aaKnown RBP18.67■□□□□ 0.58
CLSTN3-214ENST00000542663 CAMK2GQ13555 558 aaPredicted RBP18.67■□□□□ 0.58
CLSTN3-214ENST00000542663 SERPINA13PQ6UXR4 307 aa18.67■□□□□ 0.58
CLSTN3-214ENST00000542663 FAM217AQ8IXS0 508 aa18.67■□□□□ 0.58
CLSTN3-214ENST00000542663 SNX19Q92543 992 aa18.67■□□□□ 0.58
CLSTN3-214ENST00000542663 CIPCQ9C0C6 399 aa18.67■□□□□ 0.58
CLSTN3-214ENST00000542663 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms