RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	ELF2	Q15723	593 aa		4.56	□□□□□ -1.68
PRKDC-210	ENST00000541488	ARHGAP15	Q53QZ3	475 aa		4.56	□□□□□ -1.68
PRKDC-210	ENST00000541488	PIM3	Q86V86	326 aa		4.56	□□□□□ -1.68
PRKDC-210	ENST00000541488	DGKH	Q86XP1	1220 aa		4.56	□□□□□ -1.68
PRKDC-210	ENST00000541488	CCDC28A	Q8IWP9	274 aa		4.56	□□□□□ -1.68
PRKDC-210	ENST00000541488	SAMD14	Q8IZD0	417 aa	Predicted RBP	4.56	□□□□□ -1.68
PRKDC-210	ENST00000541488	ADGRF4	Q8IZF3	695 aa		4.56	□□□□□ -1.68
PRKDC-210	ENST00000541488	ABHD5	Q8WTS1	349 aa		4.56	□□□□□ -1.68
PRKDC-210	ENST00000541488	AKAP1	Q92667	903 aa	Known RBP eCLIP	4.56	□□□□□ -1.68
PRKDC-210	ENST00000541488	GRAMD1A	Q96CP6	724 aa		4.56	□□□□□ -1.68
PRKDC-210	ENST00000541488	VCPIP1	Q96JH7	1222 aa		4.56	□□□□□ -1.68
PRKDC-210	ENST00000541488	MAGEB5	Q9BZ81	275 aa		4.56	□□□□□ -1.68
PRKDC-210	ENST00000541488	COG5	Q9UP83	839 aa		4.56	□□□□□ -1.68
PRKDC-210	ENST00000541488		B4DGG1	531 aa		4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	PRY	O14603	147 aa		4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	UGDH	O60701	494 aa		4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	SLC3A2	P08195	630 aa	Known RBP	4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	CD63	P08962	238 aa		4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	MYL4	P12829	197 aa		4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	PECAM1	P16284	738 aa	Predicted RBP	4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	TSHR	P16473	764 aa		4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	IGHMBP2	P38935	993 aa	Known RBP	4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	STT3A	P46977	705 aa		4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	PRIM2	P49643	509 aa		4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	HSF1	Q00613	529 aa		4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	LEXM	Q3ZCV2	418 aa		4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	COBLL1	Q53SF7	1204 aa		4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	EARS2	Q5JPH6	523 aa	Known RBP	4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	ZNF517	Q6ZMY9	492 aa	Predicted RBP	4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	KRT78	Q8N1N4	520 aa		4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	ARFGAP1	Q8N6T3	406 aa		4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	WIPF2	Q8TF74	440 aa	Predicted RBP	4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	CELF1	Q92879	486 aa	Known RBP	4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	TTC17	Q96AE7	1141 aa		4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	FAM234A	Q9H0X4	552 aa		4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	PCDHAC1	Q9H158	963 aa		4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	ZBTB26	Q9HCK0	441 aa		4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	TMOD4	Q9NZQ9	345 aa		4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	4.55	□□□□□ -1.68
PRKDC-210	ENST00000541488	CACNA1I	Q9P0X4	2223 aa		4.54	□□□□□ -1.68
PRKDC-210	ENST00000541488	APOL1	O14791	398 aa		4.54	□□□□□ -1.68
PRKDC-210	ENST00000541488	PPM1G	O15355	546 aa	Predicted RBP	4.54	□□□□□ -1.68
PRKDC-210	ENST00000541488	CBFA2T3	O75081	653 aa		4.54	□□□□□ -1.68
PRKDC-210	ENST00000541488	ALPL	P05186	524 aa		4.54	□□□□□ -1.68
PRKDC-210	ENST00000541488	MST1	P26927	711 aa		4.54	□□□□□ -1.68
PRKDC-210	ENST00000541488	NDUFS1	P28331	727 aa		4.54	□□□□□ -1.68
PRKDC-210	ENST00000541488	DGKQ	P52824	942 aa		4.54	□□□□□ -1.68
PRKDC-210	ENST00000541488	KCNJ12	Q14500	433 aa		4.54	□□□□□ -1.68
PRKDC-210	ENST00000541488	RUSC1-AS1	Q66K80	236 aa		4.54	□□□□□ -1.68
PRKDC-210	ENST00000541488	DHRS13	Q6UX07	377 aa		4.54	□□□□□ -1.68
PRKDC-210	ENST00000541488	KYAT3	Q6YP21	454 aa	Known RBP	4.54	□□□□□ -1.68
PRKDC-210	ENST00000541488	DEF8	Q6ZN54	512 aa		4.54	□□□□□ -1.68
PRKDC-210	ENST00000541488	RBM44	Q6ZP01	1051 aa	Known RBP	4.54	□□□□□ -1.68
PRKDC-210	ENST00000541488	TXLNB	Q8N3L3	684 aa		4.54	□□□□□ -1.68
PRKDC-210	ENST00000541488	ADAMTS15	Q8TE58	950 aa		4.54	□□□□□ -1.68
PRKDC-210	ENST00000541488	ZFYVE19	Q96K21	471 aa		4.54	□□□□□ -1.68
PRKDC-210	ENST00000541488	EIF3C	Q99613	913 aa	Known RBP	4.54	□□□□□ -1.68
PRKDC-210	ENST00000541488	TRMO	Q9BU70	441 aa		4.54	□□□□□ -1.68
PRKDC-210	ENST00000541488	MOV10	Q9HCE1	1003 aa	Known RBP	4.54	□□□□□ -1.68
PRKDC-210	ENST00000541488	DDX21	Q9NR30	783 aa	Known RBP eCLIP	4.54	□□□□□ -1.68
PRKDC-210	ENST00000541488	SEMA5B	Q9P283	1151 aa		4.54	□□□□□ -1.68
PRKDC-210	ENST00000541488	MAN2B2	Q9Y2E5	1009 aa		4.54	□□□□□ -1.68
PRKDC-210	ENST00000541488	TTBK1	Q5TCY1	1321 aa	Predicted RBP	4.53	□□□□□ -1.68
PRKDC-210	ENST00000541488	CCDC187	A0A096LP49	1063 aa		4.53	□□□□□ -1.68
PRKDC-210	ENST00000541488	SRGAP2B	P0DMP2	458 aa		4.53	□□□□□ -1.68
PRKDC-210	ENST00000541488	SLC5A1	P13866	664 aa		4.53	□□□□□ -1.68
PRKDC-210	ENST00000541488	RPS6KB1	P23443	525 aa		4.53	□□□□□ -1.68
PRKDC-210	ENST00000541488	GSTM5	P46439	218 aa		4.53	□□□□□ -1.68
PRKDC-210	ENST00000541488	AGTR2	P50052	363 aa		4.53	□□□□□ -1.68
PRKDC-210	ENST00000541488	HTR6	P50406	440 aa		4.53	□□□□□ -1.68
PRKDC-210	ENST00000541488	CASP5	P51878	434 aa		4.53	□□□□□ -1.68
PRKDC-210	ENST00000541488	SEMA3B	Q13214	749 aa		4.53	□□□□□ -1.68
PRKDC-210	ENST00000541488	EEF1AKMT2	Q5JPI9	291 aa	Known RBP	4.53	□□□□□ -1.68
PRKDC-210	ENST00000541488	MRNIP	Q6NTE8	343 aa		4.53	□□□□□ -1.68
PRKDC-210	ENST00000541488	ZNF549	Q6P9A3	640 aa		4.53	□□□□□ -1.68
PRKDC-210	ENST00000541488	KIAA0408	Q6ZU52	694 aa		4.53	□□□□□ -1.68
PRKDC-210	ENST00000541488	FAM57B	Q71RH2	274 aa		4.53	□□□□□ -1.68
PRKDC-210	ENST00000541488	ZDHHC17	Q8IUH5	632 aa		4.53	□□□□□ -1.68
PRKDC-210	ENST00000541488	CCAR1	Q8IX12	1150 aa	Known RBP	4.53	□□□□□ -1.68
PRKDC-210	ENST00000541488	RNF152	Q8N8N0	203 aa		4.53	□□□□□ -1.68
PRKDC-210	ENST00000541488	SLC25A28	Q96A46	364 aa		4.53	□□□□□ -1.68
PRKDC-210	ENST00000541488	WDR24	Q96S15	920 aa		4.53	□□□□□ -1.68
PRKDC-210	ENST00000541488	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	4.53	□□□□□ -1.68	7e-7	■□□□□ 9
PRKDC-210	ENST00000541488	AAMDC	Q9H7C9	122 aa		4.53	□□□□□ -1.68
PRKDC-210	ENST00000541488	ZBTB40	Q9NUA8	1239 aa		4.53	□□□□□ -1.68
PRKDC-210	ENST00000541488	RGS17	Q9UGC6	210 aa	Predicted RBP	4.53	□□□□□ -1.68
PRKDC-210	ENST00000541488	SPATA31A1	Q5TZJ5	1347 aa		4.52	□□□□□ -1.69
PRKDC-210	ENST00000541488	IGKV2D-30	A0A075B6S6	120 aa		4.52	□□□□□ -1.69
PRKDC-210	ENST00000541488	TTC34	A8MYJ7	566 aa		4.52	□□□□□ -1.69
PRKDC-210	ENST00000541488	APAF1	O14727	1248 aa		4.52	□□□□□ -1.69
PRKDC-210	ENST00000541488	AREL1	O15033	823 aa		4.52	□□□□□ -1.69
PRKDC-210	ENST00000541488	NCK2	O43639	380 aa		4.52	□□□□□ -1.69
PRKDC-210	ENST00000541488	CNOT3	O75175	753 aa	Known RBP	4.52	□□□□□ -1.69
PRKDC-210	ENST00000541488	TULP3	O75386	442 aa		4.52	□□□□□ -1.69
PRKDC-210	ENST00000541488	NDUFB8	O95169	186 aa		4.52	□□□□□ -1.69
PRKDC-210	ENST00000541488	HARS	P12081	509 aa	Known RBP	4.52	□□□□□ -1.69
PRKDC-210	ENST00000541488	PEPD	P12955	493 aa		4.52	□□□□□ -1.69
PRKDC-210	ENST00000541488	STAT6	P42226	847 aa		4.52	□□□□□ -1.69
PRKDC-210	ENST00000541488	PMS2P11	Q13670	270 aa		4.52	□□□□□ -1.69
PRKDC-210	ENST00000541488	RAPGEF1	Q13905	1077 aa		4.52	□□□□□ -1.69

Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms