RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 PTPRJQ12913 1337 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 PPEF1O14829 653 aaPredicted RBP13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 C4BPAP04003 597 aaKnown RBP13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 EIF4BP23588 611 aaKnown RBP13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 SERPINB9P50453 376 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 WNT7BP56706 349 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 NAA20P61599 178 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 JAG1P78504 1218 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 EN1Q05925 392 aaPredicted RBP13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 ART3Q13508 389 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 TEDDM1Q5T9Z0 273 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 BNC2Q6ZN30 1099 aaPredicted RBP13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 ZNF410Q86VK4 478 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 BHLHE22Q8NFJ8 381 aaPredicted RBP13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 PGBD4Q96DM1 585 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 ZBTB45Q96K62 511 aaPredicted RBP13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 PFDN4Q9NQP4 134 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 GABBR1Q9UBS5 961 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 ZNF180Q9UJW8 692 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 CNTNAP2Q9UHC6 1331 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 WNK3Q9BYP7 1800 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 BTBD19C9JJ37 291 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 H3BNX3 289 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 CASQ2O14958 399 aaPredicted RBP13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 AP1G1O43747 822 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 SERPINB2P05120 415 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 SULT2A1Q06520 285 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 PRKG1Q13976 671 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 B3GNT9Q6UX72 402 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 UNC5AQ6ZN44 842 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 SNX32Q86XE0 403 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 C10orf107Q8IVU9 208 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 OR5B17Q8NGF7 314 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 GIPC3Q8TF64 312 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 TDRD3Q9H7E2 651 aaKnown RBP13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 RSAD1Q9HA92 442 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 CYP26B1Q9NR63 512 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 NXF1Q9UBU9 619 aaKnown RBP13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 FAM198AQ9UFP1 575 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 CHADO15335 359 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 RALBP11234 206 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 MTTPP55157 894 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 TFDP2Q14188 446 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 ADGRE1Q14246 886 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 ADRM1Q16186 407 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 MTERF2Q49AM1 385 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 TATDN1Q6P1N9 297 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 SH3BP5LQ7L8J4 393 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 DIS3LQ8TF46 1054 aaKnown RBP13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 ATXN7L3BQ96GX2 97 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 SENP6Q9GZR1 1112 aaPredicted RBP13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 POLR3FQ9H1D9 316 aaPredicted RBP13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 DOLKQ9UPQ8 538 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 ARHGEF37A1IGU5 675 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 NFIBO00712 420 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 TRDMT1O14717 391 aaKnown RBP13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 GLRA3O75311 464 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 CDH2P19022 906 aaPredicted RBP13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 TYK2P29597 1187 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 MIPP30301 263 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 HSPA13P48723 471 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 ESRRGP62508 458 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 CDK18Q07002 472 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 RC3H1Q5TC82 1133 aaKnown RBP13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 ZNF772Q68DY9 489 aaPredicted RBP13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 C16orf89Q6UX73 402 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 ADGRF2Q8IZF7 708 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 DEPTORQ8TB45 409 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 FNDC8Q8TC99 324 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 TMEM174Q8WUU8 243 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 CDKL2Q92772 493 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 TRPV6Q9H1D0 765 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 SEMA6AQ9H2E6 1030 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 STN1Q9H668 368 aaKnown RBP13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 POPDC2Q9HBU9 364 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 PLK2Q9NYY3 685 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 TJP2Q9UDY2 1190 aa13.23□□□□□ -0.29
SFSWAP-209ENST00000540469 ADCY6O43306 1168 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 MLH1P40692 756 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 STT3AP46977 705 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 GABRB2P47870 512 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 JAK3P52333 1124 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 BCAR1P56945 870 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 PRAMEP78395 509 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 KLF10Q13118 480 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 KCNJ11Q14654 390 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 ITPRIPL1Q6GPH6 555 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 SREK1Q8WXA9 508 aaKnown RBP13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 APBB2Q92870 758 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 PPP1R14BQ96C90 147 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 TMA16Q96EY4 203 aaKnown RBP13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 ZNF778Q96MU6 729 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 LENG8Q96PV6 779 aaPredicted RBP13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 C17orf75Q9HAS0 396 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 CISHQ9NSE2 258 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 ANKEF1Q9NU02 776 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 SLC17A6Q9P2U8 582 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 EFR3BQ9Y2G0 817 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms