RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 TMEM102Q8N9M5 508 aaPredicted RBP12.8□□□□□ -0.36
USP3-203ENST00000538686 SNX31Q8N9S9 440 aa12.8□□□□□ -0.36
USP3-203ENST00000538686 PNPT1Q8TCS8 783 aaKnown RBP12.8□□□□□ -0.36
USP3-203ENST00000538686 RAB2BQ8WUD1 216 aa12.8□□□□□ -0.36
USP3-203ENST00000538686 CHAC2Q8WUX2 184 aa12.8□□□□□ -0.36
USP3-203ENST00000538686 CFAP36Q96G28 342 aa12.8□□□□□ -0.36
USP3-203ENST00000538686 BRIP1Q9BX63 1249 aa12.8□□□□□ -0.36
USP3-203ENST00000538686 CLPBQ9H078 707 aa12.8□□□□□ -0.36
USP3-203ENST00000538686 GPN2Q9H9Y4 310 aaPredicted RBP12.8□□□□□ -0.36
USP3-203ENST00000538686 ZNF304Q9HCX3 659 aa12.8□□□□□ -0.36
USP3-203ENST00000538686 SLAIN2Q9P270 581 aa12.8□□□□□ -0.36
USP3-203ENST00000538686 AGO2Q9UKV8 859 aaKnown RBP12.8□□□□□ -0.36
USP3-203ENST00000538686 ZBTB21Q9ULJ3 1066 aa12.8□□□□□ -0.36
USP3-203ENST00000538686 SPEF1Q9Y4P9 236 aa12.8□□□□□ -0.36
USP3-203ENST00000538686 UBR1Q8IWV7 1749 aa12.8□□□□□ -0.36
USP3-203ENST00000538686 A0A0B4J269 797 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 DENND3A2RUS2 1198 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 HOXC11O43248 304 aaPredicted RBP12.79□□□□□ -0.36
USP3-203ENST00000538686 DYRK3O43781 588 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 DEAF1O75398 565 aaPredicted RBP12.79□□□□□ -0.36
USP3-203ENST00000538686 SORBS2O94875 1100 aaKnown RBP12.79□□□□□ -0.36
USP3-203ENST00000538686 ERBB2P04626 1255 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 KRT10P13645 584 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 NAGAP17050 411 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 BMPR1AP36894 532 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 TUBB3Q13509 450 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 SELPLGQ14242 412 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 RAB39AQ14964 217 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 FASTKD3Q14CZ7 662 aaKnown RBP12.79□□□□□ -0.36
USP3-203ENST00000538686 MAPRE1Q15691 268 aaKnown RBP12.79□□□□□ -0.36
USP3-203ENST00000538686 HIF1AQ16665 826 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 DRICH1Q6PGQ1 229 aaPredicted RBP12.79□□□□□ -0.36
USP3-203ENST00000538686 NUDCD3Q8IVD9 361 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 THEMISQ8N1K5 641 aaPredicted RBP12.79□□□□□ -0.36
USP3-203ENST00000538686 AFAP1L2Q8N4X5 818 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 ASCC1Q8N9N2 400 aaKnown RBP12.79□□□□□ -0.36
USP3-203ENST00000538686 GRPEL2Q8TAA5 225 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 PDCD6IPQ8WUM4 868 aaKnown RBP12.79□□□□□ -0.36
USP3-203ENST00000538686 FGFBP2Q9BYJ0 223 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 NYXQ9GZU5 481 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 SP140LQ9H930 580 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 NEK6Q9HC98 313 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 PCDH12Q9NPG4 1184 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 TESPA1A2RU30 521 aaPredicted RBP12.79□□□□□ -0.36
USP3-203ENST00000538686 SMCO2A6NFE2 343 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 TAF4O00268 1085 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 PDE8BO95263 885 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 SLC5A1P13866 664 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 ITIH1P19827 911 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 GPX6P59796 221 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 OTUD4Q01804 1114 aaKnown RBP12.79□□□□□ -0.36
USP3-203ENST00000538686 HERC3Q15034 1050 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 CHI3L2Q15782 390 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 ZYXQ15942 572 aaKnown RBP12.79□□□□□ -0.36
USP3-203ENST00000538686 NFIL3Q16649 462 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 INSCQ1MX18 579 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 BMT2Q1RMZ1 405 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 TJAP1Q5JTD0 557 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 NDUFAF5Q5TEU4 345 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 TTC33Q6PID6 262 aaPredicted RBP12.79□□□□□ -0.36
USP3-203ENST00000538686 LDHAL6AQ6ZMR3 332 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 RNF19BQ6ZMZ0 732 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 SH2D5Q6ZV89 423 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 ELMOD2Q8IZ81 293 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 LILRA2Q8N149 483 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 SIMC1Q8NDZ2 872 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 FNIP1Q8TF40 1166 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 SNX18Q96RF0 628 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 DNAJC28Q9NX36 388 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 IPO11Q9UI26 975 aaKnown RBP12.79□□□□□ -0.36
USP3-203ENST00000538686 RGPD2P0DJD1 1756 aa12.79□□□□□ -0.36
USP3-203ENST00000538686 C7orf72A4D263 438 aa12.78□□□□□ -0.36
USP3-203ENST00000538686 NR4A1P22736 598 aa12.78□□□□□ -0.36
USP3-203ENST00000538686 IL4RP24394 825 aa12.78□□□□□ -0.36
USP3-203ENST00000538686 EEF1DP29692 281 aaKnown RBP12.78□□□□□ -0.36
USP3-203ENST00000538686 PSMC2P35998 433 aaKnown RBP12.78□□□□□ -0.36
USP3-203ENST00000538686 FMO5P49326 533 aa12.78□□□□□ -0.36
USP3-203ENST00000538686 TFDP1Q14186 410 aa12.78□□□□□ -0.36
USP3-203ENST00000538686 PPP2R5DQ14738 602 aa12.78□□□□□ -0.36
USP3-203ENST00000538686 GRM4Q14833 912 aa12.78□□□□□ -0.36
USP3-203ENST00000538686 UGT3A1Q6NUS8 523 aa12.78□□□□□ -0.36
USP3-203ENST00000538686 FAM117BQ6P1L5 589 aa12.78□□□□□ -0.36
USP3-203ENST00000538686 C16orf46Q6P387 395 aa12.78□□□□□ -0.36
USP3-203ENST00000538686 LMOD2Q6P5Q4 547 aa12.78□□□□□ -0.36
USP3-203ENST00000538686 TMEM26Q6ZUK4 368 aa12.78□□□□□ -0.36
USP3-203ENST00000538686 KCNK18Q7Z418 384 aa12.78□□□□□ -0.36
USP3-203ENST00000538686 ADAMTSL2Q86TH1 951 aa12.78□□□□□ -0.36
USP3-203ENST00000538686 PIWIL2Q8TC59 973 aaKnown RBP12.78□□□□□ -0.36
USP3-203ENST00000538686 ZC3H15Q8WU90 426 aaKnown RBP12.78□□□□□ -0.36
USP3-203ENST00000538686 NRBF2Q96F24 287 aa12.78□□□□□ -0.36
USP3-203ENST00000538686 SH3YL1Q96HL8 342 aaPredicted RBP12.78□□□□□ -0.36
USP3-203ENST00000538686 YTHDF1Q9BYJ9 559 aaKnown RBP12.78□□□□□ -0.36
USP3-203ENST00000538686 INTS2Q9H0H0 1204 aaKnown RBP12.78□□□□□ -0.36
USP3-203ENST00000538686 C12orf65Q9H3J6 166 aaKnown RBP12.78□□□□□ -0.36
USP3-203ENST00000538686 RAD21L1Q9H4I0 556 aa12.78□□□□□ -0.36
USP3-203ENST00000538686 NANOGQ9H9S0 305 aa12.78□□□□□ -0.36
USP3-203ENST00000538686 C12orf4Q9NQ89 552 aa12.78□□□□□ -0.36
USP3-203ENST00000538686 DNAJC5BQ9UF47 199 aa12.78□□□□□ -0.36
USP3-203ENST00000538686 PSME2Q9UL46 239 aa12.78□□□□□ -0.36
USP3-203ENST00000538686 PLLPQ9Y342 182 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms