RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 GRM2Q14416 872 aa12.46□□□□□ -0.41
CLIP1-208ENST00000537004 SIX1Q15475 284 aaPredicted RBP12.46□□□□□ -0.41
CLIP1-208ENST00000537004 NFE2Q16621 373 aaPredicted RBP12.46□□□□□ -0.41
CLIP1-208ENST00000537004 CYP1B1Q16678 543 aa12.46□□□□□ -0.41
CLIP1-208ENST00000537004 FAM171BQ6P995 826 aa12.46□□□□□ -0.41
CLIP1-208ENST00000537004 SUGP1Q8IWZ8 645 aaKnown RBP12.46□□□□□ -0.41
CLIP1-208ENST00000537004 RHOT1Q8IXI2 618 aa12.46□□□□□ -0.41
CLIP1-208ENST00000537004 TTC39CQ8N584 583 aa12.46□□□□□ -0.41
CLIP1-208ENST00000537004 ZSCAN18Q8TBC5 510 aaPredicted RBP12.46□□□□□ -0.41
CLIP1-208ENST00000537004 FAM71BQ8TC56 605 aa12.46□□□□□ -0.41
CLIP1-208ENST00000537004 C2orf15Q8WU43 125 aaKnown RBP12.46□□□□□ -0.41
CLIP1-208ENST00000537004 MCEEQ96PE7 176 aa12.46□□□□□ -0.41
CLIP1-208ENST00000537004 RAB17Q9H0T7 212 aa12.46□□□□□ -0.41
CLIP1-208ENST00000537004 IL21Q9HBE4 155 aa12.46□□□□□ -0.41
CLIP1-208ENST00000537004 TMEM51Q9NW97 253 aa12.46□□□□□ -0.41
CLIP1-208ENST00000537004 HSFX1Q9UBD0 423 aa12.46□□□□□ -0.41
CLIP1-208ENST00000537004 PCYOX1Q9UHG3 505 aa12.46□□□□□ -0.41
CLIP1-208ENST00000537004 CYTH4Q9UIA0 394 aa12.46□□□□□ -0.41
CLIP1-208ENST00000537004 STRIP2Q9ULQ0 834 aa12.46□□□□□ -0.41
CLIP1-208ENST00000537004 MAGED2Q9UNF1 606 aaPredicted RBP12.46□□□□□ -0.41
CLIP1-208ENST00000537004 FAM187AA6NFU0 413 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 O00370 1275 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 PI15O43692 258 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 RARAP10276 462 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 HMGA1P17096 107 aaKnown RBP12.45□□□□□ -0.42
CLIP1-208ENST00000537004 NPR3P17342 541 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 BDNFP23560 247 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 GGCXP38435 758 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 NDST1P52848 882 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 SMARCB1Q12824 385 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 VEPH1Q14D04 833 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 PTPN20Q4JDL3 420 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 MDH1BQ5I0G3 518 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 PPP1R15BQ5SWA1 713 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 DCUN1D2Q6PH85 259 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 MTSS1LQ765P7 747 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 JAMLQ86YT9 394 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 SPATA2LQ8IUW3 424 aaPredicted RBP12.45□□□□□ -0.42
CLIP1-208ENST00000537004 SCN4BQ8IWT1 228 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 MREGQ8N565 214 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 C3orf20Q8ND61 904 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 MYLPFQ96A32 169 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 RSPRY1Q96DX4 576 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 PCED1BQ96HM7 432 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 SNX25Q9H3E2 840 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 MFSD1Q9H3U5 465 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 FAM114A2Q9NRY5 505 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 LCMT1Q9UIC8 334 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 CDH9Q9ULB4 789 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.45□□□□□ -0.42
CLIP1-208ENST00000537004 HCN4Q9Y3Q4 1203 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 ASB3Q9Y575 518 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 A8MXQ7 604 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 AGPSO00116 658 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 CLDN5O00501 218 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 SYF2O95926 243 aaKnown RBP12.45□□□□□ -0.42
CLIP1-208ENST00000537004 VDRP11473 427 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 SSR1P43307 286 aaKnown RBP12.45□□□□□ -0.42
CLIP1-208ENST00000537004 CACNA2D1P54289 1103 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 ZNF252P-AS1Q0IIN9 211 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 LLGL1Q15334 1064 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 TAF12Q16514 161 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 TTC27Q6P3X3 843 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 CCDC137Q6PK04 289 aaKnown RBP12.45□□□□□ -0.42
CLIP1-208ENST00000537004 TMEM150AQ86TG1 271 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 C12orf50Q8NA57 414 aaPredicted RBP12.45□□□□□ -0.42
CLIP1-208ENST00000537004 HEXIM2Q96MH2 286 aaKnown RBP12.45□□□□□ -0.42
CLIP1-208ENST00000537004 ERP44Q9BS26 406 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 TRIM31Q9BZY9 425 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 SMG9Q9H0W8 520 aaKnown RBP12.45□□□□□ -0.42
CLIP1-208ENST00000537004 NEUROG2Q9H2A3 272 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 DPH5Q9H2P9 285 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 TMEM30AQ9NV96 361 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 RASAL2Q9UJF2 1139 aa12.45□□□□□ -0.42
CLIP1-208ENST00000537004 COL4A3Q01955 1670 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 M0QYV0 167 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 STK25O00506 426 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 MICAL2O94851 1124 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 PTPN1P18031 435 aaKnown RBP12.44□□□□□ -0.42
CLIP1-208ENST00000537004 AVPR2P30518 371 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 PTGIRP43119 386 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 TERF2Q15554 542 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 SGO2Q562F6 1265 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 ALS2CLQ60I27 953 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 DUPD1Q68J44 220 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 CWF19L1Q69YN2 538 aaKnown RBP12.44□□□□□ -0.42
CLIP1-208ENST00000537004 ITIH5Q86UX2 942 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 CCDC50Q8IVM0 306 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 KATNAL2Q8IYT4 538 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 TMEM105Q8N8V8 129 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 LEMD2Q8NC56 503 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 SPATA18Q8TC71 538 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 SMARCD2Q92925 531 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 LRRC3BQ96PB8 259 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 CPXM1Q96SM3 734 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 ZFP14Q9HCL3 533 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 TJP2Q9UDY2 1190 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 CFAP54Q96N23 3096 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 F5P12259 2224 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 GOLGA8SH3BPF8 625 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms