RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 CDK16Q00536 496 aa13.6□□□□□ -0.23
LDLR-203ENST00000535915 ZNF618Q5T7W0 954 aa13.6□□□□□ -0.23
LDLR-203ENST00000535915 ANKRD20A3Q5VUR7 823 aa13.6□□□□□ -0.23
LDLR-203ENST00000535915 ALKAL1Q6UXT8 129 aa13.6□□□□□ -0.23
LDLR-203ENST00000535915 PYROXD2Q8N2H3 581 aa13.6□□□□□ -0.23
LDLR-203ENST00000535915 ARMC2Q8NEN0 867 aa13.6□□□□□ -0.23
LDLR-203ENST00000535915 SLC2A14Q8TDB8 520 aa13.6□□□□□ -0.23
LDLR-203ENST00000535915 ZC3H15Q8WU90 426 aaKnown RBP13.6□□□□□ -0.23
LDLR-203ENST00000535915 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.6□□□□□ -0.236e-8■□□□□ 8.2
LDLR-203ENST00000535915 DTLQ9NZJ0 730 aa13.6□□□□□ -0.23
LDLR-203ENST00000535915 MFHAS1Q9Y4C4 1052 aa13.6□□□□□ -0.23
LDLR-203ENST00000535915 I3L4J1 428 aa13.6□□□□□ -0.23
LDLR-203ENST00000535915 TOMM70O94826 608 aa13.6□□□□□ -0.23
LDLR-203ENST00000535915 ARL4AP40617 200 aa13.6□□□□□ -0.23
LDLR-203ENST00000535915 IRX1P78414 480 aaPredicted RBP13.6□□□□□ -0.23
LDLR-203ENST00000535915 MRPS5P82675 430 aaKnown RBP13.6□□□□□ -0.23
LDLR-203ENST00000535915 NAA25Q14CX7 972 aa13.6□□□□□ -0.23
LDLR-203ENST00000535915 LDLRAD1Q5T700 205 aa13.6□□□□□ -0.23
LDLR-203ENST00000535915 MROH9Q5TGP6 573 aa13.6□□□□□ -0.23
LDLR-203ENST00000535915 NCBP2-AS2Q69YL0 99 aa13.6□□□□□ -0.23
LDLR-203ENST00000535915 DENND5BQ6ZUT9 1274 aa13.6□□□□□ -0.23
LDLR-203ENST00000535915 CRYBG2Q8N1P7 616 aa13.6□□□□□ -0.23
LDLR-203ENST00000535915 DEPDC1BQ8WUY9 529 aa13.6□□□□□ -0.23
LDLR-203ENST00000535915 MAML3Q96JK9 1138 aa13.6□□□□□ -0.23
LDLR-203ENST00000535915 XAB2Q9HCS7 855 aaKnown RBP13.6□□□□□ -0.23
LDLR-203ENST00000535915 PCMTD2Q9NV79 361 aa13.6□□□□□ -0.23
LDLR-203ENST00000535915 C2orf71A6NGG8 1288 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 KLF11O14901 512 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 SPTLC1O15269 473 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 CD4P01730 458 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 MYL2P10916 166 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 HOXD8P13378 290 aaPredicted RBP13.59□□□□□ -0.23
LDLR-203ENST00000535915 ACADSBP45954 432 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 ARCQ7LC44 396 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 FAM131BQ86XD5 332 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 APPL2Q8NEU8 664 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 TFB1MQ8WVM0 346 aaKnown RBP13.59□□□□□ -0.23
LDLR-203ENST00000535915 SKA1Q96BD8 255 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 FAM149B1Q96BN6 582 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 MTBPQ96DY7 904 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 ABHD16BQ9H3Z7 469 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 ARL8BQ9NVJ2 186 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 PIN4Q9Y237 131 aaKnown RBP13.59□□□□□ -0.23
LDLR-203ENST00000535915 PCDHA11Q9Y5I1 949 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 FAM159BA6NKW6 160 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 PIRO00625 290 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 ADCY6O43306 1168 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 SCNN1AP37088 669 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 TMPRSS15P98073 1019 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 CDC42EP1Q00587 391 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 SEMA5AQ13591 1074 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 C9orf131Q5VYM1 1079 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 CASC4Q6P4E1 433 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 STRADAQ7RTN6 431 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 GPR142Q7Z601 462 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 TRIM42Q8IWZ5 723 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 NDUFAF2Q8N183 169 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 HTR3CQ8WXA8 447 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 APBB2Q92870 758 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 ZNF560Q96MR9 790 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 TINF2Q9BSI4 451 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 ZNF408Q9H9D4 720 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 GOLGA2P5Q9HBQ8 144 aa13.59□□□□□ -0.23
LDLR-203ENST00000535915 NKX1-2Q9UD57 310 aaPredicted RBP13.59□□□□□ -0.23
LDLR-203ENST00000535915 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.58□□□□□ -0.24
LDLR-203ENST00000535915 SMIM28A0A1B0GU29 152 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 CCDC195A0A1B0GUA6 201 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 FAM237BA0A1B0GVD1 139 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 BTBD19C9JJ37 291 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 CCDC22O60826 627 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 IL1BP01584 269 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 SMIM10L2AP0DMW4 78 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 SMIM10L2BP0DMW5 78 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 CYP2C9P11712 490 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 DARSP14868 501 aaKnown RBP13.58□□□□□ -0.24
LDLR-203ENST00000535915 CCNFP41002 786 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 SULT1E1P49888 294 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 EFHC1Q5JVL4 640 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 ANKRD20A2Q5SQ80 823 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 ANKRD20A1Q5TYW2 823 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 ATG16L1Q676U5 607 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 DPY19L2Q6NUT2 758 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 KIRREL3Q8IZU9 778 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 NDRG1Q92597 394 aaKnown RBP13.58□□□□□ -0.24
LDLR-203ENST00000535915 E2F7Q96AV8 911 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 PRR11Q96HE9 360 aaPredicted RBP13.58□□□□□ -0.24
LDLR-203ENST00000535915 NSL1Q96IY1 281 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 LGMNQ99538 433 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 TUBB6Q9BUF5 446 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 DNAI2Q9GZS0 605 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 RNPEPL1Q9HAU8 725 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 SYNJ2BP-COX16A0A087WUM0 186 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 CCL15-CCL14A0A0B4J2E2 113 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 DCAF8L1A6NGE4 600 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 CYB561D2O14569 222 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 DNAJC6O75061 913 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 PEX11AO75192 247 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 VAV1P15498 845 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 MATKP42679 507 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 RPL34P49207 117 aaKnown RBP13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms