RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 SLC35F5Q8WV83 523 aa19.91■□□□□ 0.78
VPS28-213ENST00000530983 FAM136AQ96C01 138 aa19.91■□□□□ 0.78
VPS28-213ENST00000530983 MRPL45Q9BRJ2 306 aaKnown RBP19.91■□□□□ 0.78
VPS28-213ENST00000530983 WWP1Q9H0M0 922 aa19.91■□□□□ 0.78
VPS28-213ENST00000530983 STX18Q9P2W9 335 aaKnown RBP19.91■□□□□ 0.78
VPS28-213ENST00000530983 AKT3Q9Y243 479 aa19.91■□□□□ 0.78
VPS28-213ENST00000530983 NME7Q9Y5B8 376 aa19.91■□□□□ 0.78
VPS28-213ENST00000530983 SEC23IPQ9Y6Y8 1000 aaKnown RBP19.91■□□□□ 0.78
VPS28-213ENST00000530983 KLHL33A6NCF5 533 aa19.91■□□□□ 0.78
VPS28-213ENST00000530983 ANKRD33BA6NCL7 494 aa19.91■□□□□ 0.78
VPS28-213ENST00000530983 IRF6O14896 467 aa19.91■□□□□ 0.78
VPS28-213ENST00000530983 SLC25A27O95847 323 aa19.91■□□□□ 0.78
VPS28-213ENST00000530983 ATXN1P54253 815 aaKnown RBP19.91■□□□□ 0.78
VPS28-213ENST00000530983 MRPS35P82673 323 aaKnown RBP19.91■□□□□ 0.78
VPS28-213ENST00000530983 Q3C1V9 767 aa19.91■□□□□ 0.78
VPS28-213ENST00000530983 TMPRSS6Q8IU80 811 aa19.91■□□□□ 0.78
VPS28-213ENST00000530983 ADGRF2Q8IZF7 708 aa19.91■□□□□ 0.78
VPS28-213ENST00000530983 PDCD7Q8N8D1 485 aaKnown RBP19.91■□□□□ 0.78
VPS28-213ENST00000530983 RBM15BQ8NDT2 890 aaKnown RBP19.91■□□□□ 0.78
VPS28-213ENST00000530983 RAB3IL1Q8TBN0 382 aa19.91■□□□□ 0.78
VPS28-213ENST00000530983 DTX3LQ8TDB6 740 aa19.91■□□□□ 0.78
VPS28-213ENST00000530983 SYT15Q9BQS2 421 aa19.91■□□□□ 0.78
VPS28-213ENST00000530983 HBS1LQ9Y450 684 aaKnown RBP19.91■□□□□ 0.78
VPS28-213ENST00000530983 PCDHA11Q9Y5I1 949 aa19.91■□□□□ 0.78
VPS28-213ENST00000530983 MAGEC1O60732 1142 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 SNUPNO95149 360 aaKnown RBP19.9■□□□□ 0.78
VPS28-213ENST00000530983 AMPD1P23109 780 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 CDK18Q07002 472 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 THOC5Q13769 683 aaKnown RBP19.9■□□□□ 0.78
VPS28-213ENST00000530983 DPYSL2Q16555 572 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 MDH1BQ5I0G3 518 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 ZNF484Q5JVG2 852 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 LRRC74BQ6ZQY2 392 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 SESTD1Q86VW0 696 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 ARHGAP24Q8N264 748 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 STKLD1Q8NE28 680 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 SCG3Q8WXD2 468 aaKnown RBP19.9■□□□□ 0.78
VPS28-213ENST00000530983 STMN2Q93045 179 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 KIF12Q96FN5 646 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 CXCL16Q9H2A7 254 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 MOCS1Q9NZB8 636 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 HESX1Q9UBX0 185 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 A8MXQ7 604 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 BIRC5O15392 142 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 AP1G2O75843 785 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 KCNT2Q6UVM3 1135 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 ZCCHC23Q6ZST2 131 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 CRLF3Q8IUI8 442 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 RNF217Q8TC41 542 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 DEPDC1BQ8WUY9 529 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 AFG1LQ8WV93 481 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 CCDC106Q9BWC9 280 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 MTMR10Q9NXD2 777 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 PLA2G4CQ9UP65 541 aa19.9■□□□□ 0.78
VPS28-213ENST00000530983 MYO18AQ92614 2054 aaKnown RBP19.89■□□□□ 0.78
VPS28-213ENST00000530983 A0A0G2JLL6 359 aaPredicted RBP19.89■□□□□ 0.77
VPS28-213ENST00000530983 TSPAN1O60635 241 aa19.89■□□□□ 0.77
VPS28-213ENST00000530983 SERPINB9P50453 376 aa19.89■□□□□ 0.77
VPS28-213ENST00000530983 KLC1Q07866 573 aa19.89■□□□□ 0.77
VPS28-213ENST00000530983 SEMA5AQ13591 1074 aa19.89■□□□□ 0.77
VPS28-213ENST00000530983 KYAT1Q16773 422 aa19.89■□□□□ 0.77
VPS28-213ENST00000530983 SLC30A9Q6PML9 568 aa19.89■□□□□ 0.77
VPS28-213ENST00000530983 PRRT2Q7Z6L0 340 aaPredicted RBP19.89■□□□□ 0.77
VPS28-213ENST00000530983 UNC5BQ8IZJ1 945 aa19.89■□□□□ 0.77
VPS28-213ENST00000530983 CLEC4CQ8WTT0 213 aa19.89■□□□□ 0.77
VPS28-213ENST00000530983 FAM161BQ96MY7 647 aa19.89■□□□□ 0.77
VPS28-213ENST00000530983 QKIQ96PU8 341 aaKnown RBP eCLIP19.89■□□□□ 0.77
VPS28-213ENST00000530983 TSC22D3Q99576 134 aa19.89■□□□□ 0.77
VPS28-213ENST00000530983 C11orf84Q9BUA3 381 aaPredicted RBP19.89■□□□□ 0.77
VPS28-213ENST00000530983 DHX35Q9H5Z1 703 aaKnown RBP19.89■□□□□ 0.77
VPS28-213ENST00000530983 XAB2Q9HCS7 855 aaKnown RBP19.89■□□□□ 0.77
VPS28-213ENST00000530983 NR2E3Q9Y5X4 410 aa19.89■□□□□ 0.77
VPS28-213ENST00000530983 CSADQ9Y600 493 aa19.89■□□□□ 0.77
VPS28-213ENST00000530983 PPEF2O14830 753 aa19.88■□□□□ 0.77
VPS28-213ENST00000530983 GSRP00390 522 aa19.88■□□□□ 0.77
VPS28-213ENST00000530983 SETSIPP0DME0 302 aa19.88■□□□□ 0.77
VPS28-213ENST00000530983 MXRA7P84157 204 aa19.88■□□□□ 0.77
VPS28-213ENST00000530983 KDSRQ06136 332 aa19.88■□□□□ 0.77
VPS28-213ENST00000530983 RCN2Q14257 317 aa19.88■□□□□ 0.77
VPS28-213ENST00000530983 KCTD2Q14681 263 aa19.88■□□□□ 0.77
VPS28-213ENST00000530983 NBPF20Q3BBV1 942 aa19.88■□□□□ 0.77
VPS28-213ENST00000530983 GJC2Q5T442 439 aaPredicted RBP19.88■□□□□ 0.77
VPS28-213ENST00000530983 TIFABQ6ZNK6 161 aa19.88■□□□□ 0.77
VPS28-213ENST00000530983 MMP19Q99542 508 aa19.88■□□□□ 0.77
VPS28-213ENST00000530983 RBPJLQ9UBG7 517 aa19.88■□□□□ 0.77
VPS28-213ENST00000530983 TAGLN3Q9UI15 199 aa19.88■□□□□ 0.77
VPS28-213ENST00000530983 SNX9Q9Y5X1 595 aa19.88■□□□□ 0.77
VPS28-213ENST00000530983 DCAF8L1A6NGE4 600 aa19.88■□□□□ 0.77
VPS28-213ENST00000530983 LGALS2P05162 132 aa19.88■□□□□ 0.77
VPS28-213ENST00000530983 ADORA2AP29274 412 aa19.88■□□□□ 0.77
VPS28-213ENST00000530983 PTPN9P43378 593 aa19.88■□□□□ 0.77
VPS28-213ENST00000530983 TTLL4Q14679 1199 aa19.88■□□□□ 0.77
VPS28-213ENST00000530983 RBBP5Q15291 538 aaKnown RBP19.88■□□□□ 0.77
VPS28-213ENST00000530983 RFX8Q6ZV50 586 aa19.88■□□□□ 0.77
VPS28-213ENST00000530983 ARCQ7LC44 396 aa19.88■□□□□ 0.77
VPS28-213ENST00000530983 OTUD5Q96G74 571 aa19.88■□□□□ 0.77
VPS28-213ENST00000530983 LPIN3Q9BQK8 851 aa19.88■□□□□ 0.77
VPS28-213ENST00000530983 EBF4Q9BQW3 602 aa19.88■□□□□ 0.77
VPS28-213ENST00000530983 LRCH1Q9Y2L9 728 aa19.88■□□□□ 0.77
VPS28-213ENST00000530983 WASF2Q9Y6W5 498 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms