RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 ZNF461Q8TAF7 563 aa22.03■■□□□ 1.12
VPS28-212ENST00000530836 SLC7A14Q8TBB6 771 aa22.03■■□□□ 1.12
VPS28-212ENST00000530836 HDAC7Q8WUI4 952 aa22.03■■□□□ 1.12
VPS28-212ENST00000530836 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP22.03■■□□□ 1.12
VPS28-212ENST00000530836 ACSF2Q96CM8 615 aaPredicted RBP22.03■■□□□ 1.12
VPS28-212ENST00000530836 ZNF670Q9BS34 389 aa22.03■■□□□ 1.12
VPS28-212ENST00000530836 CALN1Q9BXU9 219 aa22.03■■□□□ 1.12
VPS28-212ENST00000530836 DCLK3Q9C098 648 aa22.03■■□□□ 1.12
VPS28-212ENST00000530836 PRDM16Q9HAZ2 1276 aa22.03■■□□□ 1.12
VPS28-212ENST00000530836 GDF3Q9NR23 364 aa22.03■■□□□ 1.12
VPS28-212ENST00000530836 CLDND1Q9NY35 253 aa22.03■■□□□ 1.12
VPS28-212ENST00000530836 AFF4Q9UHB7 1163 aaKnown RBP22.03■■□□□ 1.12
VPS28-212ENST00000530836 COL6A3P12111 3177 aa22.03■■□□□ 1.12
VPS28-212ENST00000530836 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP22.02■■□□□ 1.12
VPS28-212ENST00000530836 FAM92AA1XBS5 289 aa22.02■■□□□ 1.12
VPS28-212ENST00000530836 GLP2RO95838 553 aa22.02■■□□□ 1.12
VPS28-212ENST00000530836 KRT10P13645 584 aa22.02■■□□□ 1.12
VPS28-212ENST00000530836 EPCAMP16422 314 aa22.02■■□□□ 1.12
VPS28-212ENST00000530836 MGAT5BQ3V5L5 792 aa22.02■■□□□ 1.12
VPS28-212ENST00000530836 BTBD8Q5XKL5 378 aa22.02■■□□□ 1.12
VPS28-212ENST00000530836 TMCO3Q6UWJ1 677 aa22.02■■□□□ 1.12
VPS28-212ENST00000530836 CCNI2Q6ZMN8 369 aaPredicted RBP22.02■■□□□ 1.12
VPS28-212ENST00000530836 DENND5BQ6ZUT9 1274 aa22.02■■□□□ 1.12
VPS28-212ENST00000530836 ANKS1BQ7Z6G8 1248 aa22.02■■□□□ 1.12
VPS28-212ENST00000530836 CASP10Q92851 521 aa22.02■■□□□ 1.12
VPS28-212ENST00000530836 NTAN1Q96AB6 310 aa22.02■■□□□ 1.12
VPS28-212ENST00000530836 HERPUD2Q9BSE4 406 aa22.02■■□□□ 1.12
VPS28-212ENST00000530836 ARFGAP3Q9NP61 516 aa22.02■■□□□ 1.12
VPS28-212ENST00000530836 RCOR3Q9P2K3 495 aaPredicted RBP22.02■■□□□ 1.12
VPS28-212ENST00000530836 ATG2AQ2TAZ0 1938 aa22.02■■□□□ 1.12
VPS28-212ENST00000530836 WDR27A2RRH5 827 aa22.02■■□□□ 1.11
VPS28-212ENST00000530836 ABLIM3O94929 683 aa22.02■■□□□ 1.11
VPS28-212ENST00000530836 LTBRP36941 435 aa22.02■■□□□ 1.11
VPS28-212ENST00000530836 PSEN1P49768 467 aa22.02■■□□□ 1.11
VPS28-212ENST00000530836 GUCY2DQ02846 1103 aa22.02■■□□□ 1.11
VPS28-212ENST00000530836 CUL1Q13616 776 aa22.02■■□□□ 1.11
VPS28-212ENST00000530836 DPYSL3Q14195 570 aa22.02■■□□□ 1.11
VPS28-212ENST00000530836 ARL13BQ3SXY8 428 aa22.02■■□□□ 1.11
VPS28-212ENST00000530836 RAB6CQ53S08 254 aa22.02■■□□□ 1.11
VPS28-212ENST00000530836 ATL2Q8NHH9 583 aa22.02■■□□□ 1.11
VPS28-212ENST00000530836 SEPT5Q99719 369 aaPredicted RBP22.02■■□□□ 1.11
VPS28-212ENST00000530836 ADAM33Q9BZ11 813 aa22.02■■□□□ 1.11
VPS28-212ENST00000530836 RAB6CQ9H0N0 254 aa22.02■■□□□ 1.11
VPS28-212ENST00000530836 EPB41L5Q9HCM4 733 aa22.02■■□□□ 1.11
VPS28-212ENST00000530836 AP4E1Q9UPM8 1137 aa22.02■■□□□ 1.11
VPS28-212ENST00000530836 PRUNE2Q8WUY3 3088 aa22.02■■□□□ 1.11
VPS28-212ENST00000530836 TTI1O43156 1089 aa22.01■■□□□ 1.11
VPS28-212ENST00000530836 SRGAP2BP0DMP2 458 aa22.01■■□□□ 1.11
VPS28-212ENST00000530836 YWHAQP27348 245 aa22.01■■□□□ 1.11
VPS28-212ENST00000530836 CLCN6P51797 869 aa22.01■■□□□ 1.11
VPS28-212ENST00000530836 DUSP4Q13115 394 aa22.01■■□□□ 1.11
VPS28-212ENST00000530836 LLGL1Q15334 1064 aa22.01■■□□□ 1.11
VPS28-212ENST00000530836 OTUD1Q5VV17 481 aaPredicted RBP22.01■■□□□ 1.11
VPS28-212ENST00000530836 C1orf54Q8WWF1 131 aa22.01■■□□□ 1.11
VPS28-212ENST00000530836 SEC14L1Q92503 715 aa22.01■■□□□ 1.11
VPS28-212ENST00000530836 HLA-CQ95604 372 aa22.01■■□□□ 1.11
VPS28-212ENST00000530836 PCDH18Q9HCL0 1135 aa22.01■■□□□ 1.11
VPS28-212ENST00000530836 CLEC1BQ9P126 229 aa22.01■■□□□ 1.11
VPS28-212ENST00000530836 DPP7Q9UHL4 492 aa22.01■■□□□ 1.11
VPS28-212ENST00000530836 FZD10Q9ULW2 581 aa22.01■■□□□ 1.11
VPS28-212ENST00000530836 BHMG1C9JSJ3 638 aaPredicted RBP22■■□□□ 1.11
VPS28-212ENST00000530836 CST8O60676 142 aa22■■□□□ 1.11
VPS28-212ENST00000530836 VNN2O95498 520 aa22■■□□□ 1.11
VPS28-212ENST00000530836 ECEL1O95672 775 aa22■■□□□ 1.11
VPS28-212ENST00000530836 GAS8O95995 478 aa22■■□□□ 1.11
VPS28-212ENST00000530836 SPATA31D3P0C874 917 aa22■■□□□ 1.11
VPS28-212ENST00000530836 ZNF135P52742 658 aaPredicted RBP22■■□□□ 1.11
VPS28-212ENST00000530836 DLX2Q07687 328 aaPredicted RBP22■■□□□ 1.11
VPS28-212ENST00000530836 NME3Q13232 169 aa22■■□□□ 1.11
VPS28-212ENST00000530836 TTC27Q6P3X3 843 aa22■■□□□ 1.11
VPS28-212ENST00000530836 EP400NLQ6ZTU2 488 aa22■■□□□ 1.11
VPS28-212ENST00000530836 SPATA31D4Q6ZUB0 917 aa22■■□□□ 1.11
VPS28-212ENST00000530836 FAM131BQ86XD5 332 aa22■■□□□ 1.11
VPS28-212ENST00000530836 JAMLQ86YT9 394 aa22■■□□□ 1.11
VPS28-212ENST00000530836 RFX6Q8HWS3 928 aa22■■□□□ 1.11
VPS28-212ENST00000530836 KREMEN2Q8NCW0 462 aa22■■□□□ 1.11
VPS28-212ENST00000530836 TRAF3IP1Q8TDR0 691 aaPredicted RBP22■■□□□ 1.11
VPS28-212ENST00000530836 RNF157Q96PX1 679 aa22■■□□□ 1.11
VPS28-212ENST00000530836 PLEKHA4Q9H4M7 779 aa22■■□□□ 1.11
VPS28-212ENST00000530836 FAM204AQ9H8W3 233 aa22■■□□□ 1.11
VPS28-212ENST00000530836 DDIT4Q9NX09 232 aa22■■□□□ 1.11
VPS28-212ENST00000530836 SLC27A5Q9Y2P5 690 aa22■■□□□ 1.11
VPS28-212ENST00000530836 APOC4-APOC2K7ER74 178 aa21.99■■□□□ 1.11
VPS28-212ENST00000530836 APOC2P02655 101 aa21.99■■□□□ 1.11
VPS28-212ENST00000530836 CD48P09326 243 aa21.99■■□□□ 1.11
VPS28-212ENST00000530836 ATF2P15336 505 aa21.99■■□□□ 1.11
VPS28-212ENST00000530836 ZFXP17010 805 aaPredicted RBP21.99■■□□□ 1.11
VPS28-212ENST00000530836 L1CAMP32004 1257 aa21.99■■□□□ 1.11
VPS28-212ENST00000530836 PTGIRP43119 386 aa21.99■■□□□ 1.11
VPS28-212ENST00000530836 DRG2P55039 364 aaKnown RBP21.99■■□□□ 1.11
VPS28-212ENST00000530836 SCAPQ12770 1279 aa21.99■■□□□ 1.11
VPS28-212ENST00000530836 EFHC2Q5JST6 749 aa21.99■■□□□ 1.11
VPS28-212ENST00000530836 TTC9BQ8N6N2 239 aa21.99■■□□□ 1.11
VPS28-212ENST00000530836 RNF139Q8WU17 664 aa21.99■■□□□ 1.11
VPS28-212ENST00000530836 EDEM1Q92611 657 aa21.99■■□□□ 1.11
VPS28-212ENST00000530836 FAF2Q96CS3 445 aa21.99■■□□□ 1.11
VPS28-212ENST00000530836 ERP44Q9BS26 406 aa21.99■■□□□ 1.11
VPS28-212ENST00000530836 DHX35Q9H5Z1 703 aaKnown RBP21.99■■□□□ 1.11
VPS28-212ENST00000530836 UBE2ZQ9H832 354 aaPredicted RBP21.99■■□□□ 1.11
VPS28-212ENST00000530836 FAM114A2Q9NRY5 505 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms