RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 SMAD1Q15797 465 aaKnown RBP3.66□□□□□ -1.82
CD44-229ENST00000528672 CCNG2Q16589 344 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 CTXN3Q4LDR2 81 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 CCDC184Q52MB2 194 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 ZNF569Q5MCW4 686 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 SLC9C2Q5TAH2 1124 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 Q6ZPA2 131 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 ANKRD23Q86SG2 305 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 CREBRFQ8IUR6 639 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 ULK2Q8IYT8 1036 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 SYNE4Q8N205 404 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 ANKRD52Q8NB46 1076 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 MBD3L2Q8NHZ7 208 aaPredicted RBP3.66□□□□□ -1.82
CD44-229ENST00000528672 MYCBPAPQ8TBZ2 947 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 ADAMTS15Q8TE58 950 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 SSH3Q8TE77 659 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 HMGB4Q8WW32 186 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 HAS1Q92839 578 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 MYEOVQ96EZ4 313 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 MCRS1Q96EZ8 462 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 ZDHHC12Q96GR4 267 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 SERINC2Q96SA4 455 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 NUDT22Q9BRQ3 303 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 PTDSS2Q9BVG9 487 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 AMBRA1Q9C0C7 1298 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 ABHD16BQ9H3Z7 469 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 RNPEPQ9H4A4 650 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 SLITRK6Q9H5Y7 841 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 ACAD9Q9H845 621 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 MMRN2Q9H8L6 949 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 FSCN3Q9NQT6 498 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 NFU1Q9UMS0 254 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 CNTN6Q9UQ52 1028 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 DNAJC16Q9Y2G8 782 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 CYP46A1Q9Y6A2 500 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 FPGT-TNNI3KV9GXZ4 949 aa3.66□□□□□ -1.82
CD44-229ENST00000528672 PRAMEF33A0A0G2JMD5 474 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 PGPEP1LA6NFU8 196 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 STX16-NPEPL1H3BU86 382 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 RNASET2O00584 256 aaKnown RBP3.65□□□□□ -1.83
CD44-229ENST00000528672 STX16O14662 325 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 ORC4O43929 436 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 PRAMEF10O60809 474 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 TIPRLO75663 272 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 RPP40O75818 363 aaKnown RBP3.65□□□□□ -1.83
CD44-229ENST00000528672 LARGE1O95461 756 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 CER1O95813 267 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 SLPIP03973 132 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 HLA-DOAP06340 250 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 ITGAMP11215 1152 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 MYCLP12524 364 aaPredicted RBP3.65□□□□□ -1.83
CD44-229ENST00000528672 CPA1P15085 419 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 RRM1P23921 792 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 DDX6P26196 483 aaKnown RBP eCLIP3.65□□□□□ -1.83
CD44-229ENST00000528672 PGM1P36871 562 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 RAD52P43351 418 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 POLD2P49005 469 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 NDUFV1P49821 464 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 GATMP50440 423 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 CDK7P50613 346 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 INHBCP55103 352 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 CALD1Q05682 793 aaKnown RBP3.65□□□□□ -1.83
CD44-229ENST00000528672 FOXI1Q12951 378 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 MTA1Q13330 715 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 CCNIQ14094 377 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 TSTQ16762 297 aaKnown RBP3.65□□□□□ -1.83
CD44-229ENST00000528672 P3H1Q32P28 736 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 GALNTL6Q49A17 601 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 ICE2Q659A1 982 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.65□□□□□ -1.83
CD44-229ENST00000528672 MRGPREQ86SM8 312 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 CHD1LQ86WJ1 897 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 SLC15A3Q8IY34 581 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 SLC44A3Q8N4M1 653 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 METTL25Q8N6Q8 603 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 ATG4AQ8WYN0 398 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 TFAP2BQ92481 460 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 STAMQ92783 540 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 RNF125Q96EQ8 232 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 PRR11Q96HE9 360 aaPredicted RBP3.65□□□□□ -1.83
CD44-229ENST00000528672 RSRC1Q96IZ7 334 aaKnown RBP3.65□□□□□ -1.83
CD44-229ENST00000528672 Q96MF0 132 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 PDCL3Q9H2J4 239 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 KRT84Q9NSB2 600 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 LIN7CQ9NUP9 197 aaKnown RBP3.65□□□□□ -1.83
CD44-229ENST00000528672 VPS51Q9UID3 782 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 BAG5Q9UL15 447 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 GPR34Q9UPC5 381 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 NEU2Q9Y3R4 380 aa3.65□□□□□ -1.83
CD44-229ENST00000528672 WDR33Q9C0J8 1336 aaKnown RBP3.65□□□□□ -1.83
CD44-229ENST00000528672 PI4KAP2A4QPH2 592 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 VWA3AA6NCI4 1184 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 TMEM191CA6NGB0 347 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 KIF28PB7ZC32 967 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 E7ENX8 843 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 SPTLC2O15270 562 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 SEPT4O43236 478 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 KLK10O43240 276 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 DHHO43323 396 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 CDKL5O76039 1030 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms