RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 TMPRSS4Q9NRS4 437 aa14.28□□□□□ -0.12
CD44-224ENST00000526669 PIGVQ9NUD9 493 aa14.28□□□□□ -0.12
CD44-224ENST00000526669 TRMT1Q9NXH9 659 aaKnown RBP14.28□□□□□ -0.12
CD44-224ENST00000526669 RRN3Q9NYV6 651 aa14.28□□□□□ -0.12
CD44-224ENST00000526669 ZMYM5Q9UJ78 669 aa14.28□□□□□ -0.12
CD44-224ENST00000526669 GUCA1BQ9UMX6 200 aa14.28□□□□□ -0.12
CD44-224ENST00000526669 ARHGAP26Q9UNA1 814 aa14.28□□□□□ -0.12
CD44-224ENST00000526669 FAM50BQ9Y247 325 aa14.28□□□□□ -0.12
CD44-224ENST00000526669 HYOU1Q9Y4L1 999 aa14.28□□□□□ -0.12
CD44-224ENST00000526669 NCOR1O75376 2440 aa14.27□□□□□ -0.12
CD44-224ENST00000526669 KIAA1549LQ6ZVL6 1849 aa14.27□□□□□ -0.12
CD44-224ENST00000526669 COL4A2P08572 1712 aa14.27□□□□□ -0.12
CD44-224ENST00000526669 A0A0A6YYK5 440 aaPredicted RBP14.27□□□□□ -0.13
CD44-224ENST00000526669 HEPACAM2A8MVW5 462 aa14.27□□□□□ -0.13
CD44-224ENST00000526669 MYO1FO00160 1098 aa14.27□□□□□ -0.13
CD44-224ENST00000526669 STC2O76061 302 aa14.27□□□□□ -0.13
CD44-224ENST00000526669 MTA2O94776 668 aa14.27□□□□□ -0.13
CD44-224ENST00000526669 CORO1AP31146 461 aaKnown RBP14.27□□□□□ -0.13
CD44-224ENST00000526669 RDXP35241 583 aaKnown RBP14.27□□□□□ -0.13
CD44-224ENST00000526669 GJC1P36383 396 aa14.27□□□□□ -0.13
CD44-224ENST00000526669 ARHGAP25P42331 645 aa14.27□□□□□ -0.13
CD44-224ENST00000526669 SSR1P43307 286 aaKnown RBP14.27□□□□□ -0.13
CD44-224ENST00000526669 GRM2Q14416 872 aa14.27□□□□□ -0.13
CD44-224ENST00000526669 ZNF77Q15935 545 aa14.27□□□□□ -0.13
CD44-224ENST00000526669 TXLNBQ8N3L3 684 aa14.27□□□□□ -0.13
CD44-224ENST00000526669 RSAD2Q8WXG1 361 aa14.27□□□□□ -0.13
CD44-224ENST00000526669 NT5C3BQ969T7 300 aa14.27□□□□□ -0.13
CD44-224ENST00000526669 LRRC3BQ96PB8 259 aa14.27□□□□□ -0.13
CD44-224ENST00000526669 RPP25Q9BUL9 199 aaKnown RBP14.27□□□□□ -0.13
CD44-224ENST00000526669 EPS15L1Q9UBC2 864 aa14.27□□□□□ -0.13
CD44-224ENST00000526669 IP6K2Q9UHH9 426 aa14.27□□□□□ -0.13
CD44-224ENST00000526669 SH3BP1Q9Y3L3 701 aa14.27□□□□□ -0.13
CD44-224ENST00000526669 HBS1LQ9Y450 684 aaKnown RBP14.27□□□□□ -0.13
CD44-224ENST00000526669 NR2E1Q9Y466 385 aa14.27□□□□□ -0.13
CD44-224ENST00000526669 USP27XA6NNY8 438 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 SOBPA7XYQ1 873 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 BUB1BO60566 1050 aaPredicted RBP14.26□□□□□ -0.13
CD44-224ENST00000526669 PROSCO94903 275 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 TNNT1P13805 278 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 TCF4P15884 667 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 DESP17661 470 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 GGCXP38435 758 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 HDAC4P56524 1084 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 COG7P83436 770 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 ARHGAP29Q52LW3 1261 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 VITQ6UXI7 678 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 SND1Q7KZF4 910 aaKnown RBP eCLIP14.26□□□□□ -0.13
CD44-224ENST00000526669 STRADAQ7RTN6 431 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 BNIPLQ7Z465 357 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 DENND1CQ8IV53 801 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 C17orf53Q8N3J3 647 aaPredicted RBP14.26□□□□□ -0.13
CD44-224ENST00000526669 ARFGAP1Q8N6T3 406 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 CELF5Q8N6W0 485 aaKnown RBP14.26□□□□□ -0.13
CD44-224ENST00000526669 TPCN2Q8NHX9 752 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 FNIP1Q8TF40 1166 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 CENPIQ92674 756 aaPredicted RBP14.26□□□□□ -0.13
CD44-224ENST00000526669 PLD4Q96BZ4 506 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 SLC39A13Q96H72 371 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 TSGA10Q9BZW7 698 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 ZFP14Q9HCL3 533 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 GPATCH2LQ9NWQ4 482 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 LIMD1Q9UGP4 676 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 PCSK1NQ9UHG2 260 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 XPO7Q9UIA9 1087 aaKnown RBP14.26□□□□□ -0.13
CD44-224ENST00000526669 TLR6Q9Y2C9 796 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 SNX10Q9Y5X0 201 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 ZFP37Q9Y6Q3 630 aaPredicted RBP14.26□□□□□ -0.13
CD44-224ENST00000526669 NUMBLQ9Y6R0 609 aa14.26□□□□□ -0.13
CD44-224ENST00000526669 CHD5Q8TDI0 1954 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 BTNL10A8MVZ5 291 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 KRT86O43790 486 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 LRCH4O75427 683 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 RNF8O76064 485 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 ENDOD1O94919 500 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 IGLV3-27P01718 113 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 APOEP02649 317 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 KLKB1P03952 638 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 ASGR2P07307 311 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 WEE1P30291 646 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 MIPP30301 263 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 CXCR3P49682 368 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 NNTQ13423 1086 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 EIF4EBP2Q13542 120 aaPredicted RBP14.25□□□□□ -0.13
CD44-224ENST00000526669 HTR4Q13639 388 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 PIGHQ14442 188 aaPredicted RBP14.25□□□□□ -0.13
CD44-224ENST00000526669 TCEAL1Q15170 157 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 AAK1Q2M2I8 961 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 CC2D1AQ6P1N0 951 aaPredicted RBP14.25□□□□□ -0.13
CD44-224ENST00000526669 MTSS1LQ765P7 747 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 DDX42Q86XP3 938 aaKnown RBP eCLIP14.25□□□□□ -0.13
CD44-224ENST00000526669 REXO1L1PQ8IX06 675 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 CCDC185Q8N715 623 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 BPIFB1Q8TDL5 484 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 TRIM44Q96DX7 344 aaPredicted RBP14.25□□□□□ -0.13
CD44-224ENST00000526669 PGAP3Q96FM1 320 aaPredicted RBP14.25□□□□□ -0.13
CD44-224ENST00000526669 ZFYVE19Q96K21 471 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 PEBP4Q96S96 227 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 MAGEB5Q9BZ81 275 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 TKTL2Q9H0I9 626 aa14.25□□□□□ -0.13
CD44-224ENST00000526669 WDCPQ9H6R7 721 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms