RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 FNIP1Q8TF40 1166 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 NT5C3BQ969T7 300 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 LRRC3BQ96PB8 259 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 NPY6RQ99463 290 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 DDX23Q9BUQ8 820 aaKnown RBP15.97■□□□□ 0.15
LSM1-203ENST00000520755 TRIM62Q9BVG3 475 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 TSGA10Q9BZW7 698 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 GOLPH3Q9H4A6 298 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 KIF9Q9HAQ2 790 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 GKN1Q9NS71 199 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 OLA1Q9NTK5 396 aaKnown RBP15.97■□□□□ 0.15
LSM1-203ENST00000520755 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.97■□□□□ 0.15
LSM1-203ENST00000520755 MARCH2Q9P0N8 246 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 MUTYHQ9UIF7 546 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 PAXBP1Q9Y5B6 917 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 TICRRQ7Z2Z1 1910 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 COL4A3Q01955 1670 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 GRID2IPA4D2P6 1211 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 LEFTY2O00292 366 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 ZSCAN12O43309 604 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 KRT86O43790 486 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 BUB1BO60566 1050 aaPredicted RBP15.96■□□□□ 0.15
LSM1-203ENST00000520755 PSMC3P17980 439 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 NOS2P35228 1153 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 PTPN9P43378 593 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 ZNF143P52747 638 aaPredicted RBP15.96■□□□□ 0.15
LSM1-203ENST00000520755 DCAF6Q58WW2 860 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 SH3PXD2AQ5TCZ1 1133 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 DAB2IPQ5VWQ8 1189 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 MFSD6LQ8IWD5 586 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 TXLNBQ8N3L3 684 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 SLC44A3Q8N4M1 653 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 ARFGAP1Q8N6T3 406 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 LRRC57Q8N9N7 239 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 RIN3Q8TB24 985 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 BPIFB1Q8TDL5 484 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 ZFRQ96KR1 1074 aaKnown RBP15.96■□□□□ 0.15
LSM1-203ENST00000520755 TBCBQ99426 244 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 IRX2Q9BZI1 471 aaPredicted RBP15.96■□□□□ 0.15
LSM1-203ENST00000520755 SMOC2Q9H3U7 446 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 OBP2AQ9NY56 170 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 CFAP97Q9P2B7 532 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 SFMBT1Q9UHJ3 866 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 GUCA1BQ9UMX6 200 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 SORCS3Q9UPU3 1222 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 DOCK4Q8N1I0 1966 aa15.96■□□□□ 0.15
LSM1-203ENST00000520755 SLC12A8A0AV02 714 aa15.95■□□□□ 0.14
LSM1-203ENST00000520755 SCAMP3O14828 347 aaKnown RBP15.95■□□□□ 0.14
LSM1-203ENST00000520755 NARSO43776 548 aaKnown RBP15.95■□□□□ 0.14
LSM1-203ENST00000520755 HMBSP08397 361 aa15.95■□□□□ 0.14
LSM1-203ENST00000520755 PDGFRAP16234 1089 aa15.95■□□□□ 0.14
LSM1-203ENST00000520755 GDI1P31150 447 aa15.95■□□□□ 0.14
LSM1-203ENST00000520755 SULT1E1P49888 294 aa15.95■□□□□ 0.14
LSM1-203ENST00000520755 ATXN1P54253 815 aaKnown RBP15.95■□□□□ 0.14
LSM1-203ENST00000520755 USP4Q13107 963 aa15.95■□□□□ 0.14
LSM1-203ENST00000520755 EIF4EBP2Q13542 120 aaPredicted RBP15.95■□□□□ 0.14
LSM1-203ENST00000520755 ZNF77Q15935 545 aa15.95■□□□□ 0.14
LSM1-203ENST00000520755 ARHGAP29Q52LW3 1261 aa15.95■□□□□ 0.14
LSM1-203ENST00000520755 CC2D1AQ6P1N0 951 aaPredicted RBP15.95■□□□□ 0.14
LSM1-203ENST00000520755 DDX42Q86XP3 938 aaKnown RBP eCLIP15.95■□□□□ 0.14
LSM1-203ENST00000520755 NIPA2Q8N8Q9 360 aa15.95■□□□□ 0.14
LSM1-203ENST00000520755 ADAM32Q8TC27 787 aa15.95■□□□□ 0.14
LSM1-203ENST00000520755 DEPDC1BQ8WUY9 529 aa15.95■□□□□ 0.14
LSM1-203ENST00000520755 TRMT61BQ9BVS5 477 aaKnown RBP15.95■□□□□ 0.14
LSM1-203ENST00000520755 KLF16Q9BXK1 252 aaPredicted RBP15.95■□□□□ 0.14
LSM1-203ENST00000520755 IRAK2O43187 625 aa15.94■□□□□ 0.14
LSM1-203ENST00000520755 MSI1O43347 362 aaKnown RBP15.94■□□□□ 0.14
LSM1-203ENST00000520755 PROSCO94903 275 aa15.94■□□□□ 0.14
LSM1-203ENST00000520755 TCF4P15884 667 aa15.94■□□□□ 0.14
LSM1-203ENST00000520755 PSMA2P25787 234 aa15.94■□□□□ 0.14
LSM1-203ENST00000520755 SDC4P31431 198 aa15.94■□□□□ 0.14
LSM1-203ENST00000520755 NOP2P46087 812 aaKnown RBP15.94■□□□□ 0.14
LSM1-203ENST00000520755 HDAC4P56524 1084 aa15.94■□□□□ 0.14
LSM1-203ENST00000520755 ATP11AP98196 1134 aa15.94■□□□□ 0.14
LSM1-203ENST00000520755 CDO1Q16878 200 aa15.94■□□□□ 0.14
LSM1-203ENST00000520755 SLC25A52Q3SY17 297 aa15.94■□□□□ 0.14
LSM1-203ENST00000520755 C11orf63Q6NUN7 778 aa15.94■□□□□ 0.14
LSM1-203ENST00000520755 CENPIQ92674 756 aaPredicted RBP15.94■□□□□ 0.14
LSM1-203ENST00000520755 ZFYVE19Q96K21 471 aa15.94■□□□□ 0.14
LSM1-203ENST00000520755 CNPY3Q9BT09 278 aa15.94■□□□□ 0.14
LSM1-203ENST00000520755 BRD9Q9H8M2 597 aa15.94■□□□□ 0.14
LSM1-203ENST00000520755 THG1LQ9NWX6 298 aaKnown RBP15.94■□□□□ 0.14
LSM1-203ENST00000520755 SH3BP1Q9Y3L3 701 aa15.94■□□□□ 0.14
LSM1-203ENST00000520755 TMEM110-MUSTN1A8MSY1 372 aa15.93■□□□□ 0.14
LSM1-203ENST00000520755 LRCH4O75427 683 aa15.93■□□□□ 0.14
LSM1-203ENST00000520755 ENDOD1O94919 500 aa15.93■□□□□ 0.14
LSM1-203ENST00000520755 TRUB2O95900 331 aaKnown RBP15.93■□□□□ 0.14
LSM1-203ENST00000520755 TCF3P15923 654 aa15.93■□□□□ 0.14
LSM1-203ENST00000520755 MAN1A1P33908 653 aa15.93■□□□□ 0.14
LSM1-203ENST00000520755 COG7P83436 770 aa15.93■□□□□ 0.14
LSM1-203ENST00000520755 FCHO2Q0JRZ9 810 aa15.93■□□□□ 0.14
LSM1-203ENST00000520755 MESDQ14696 234 aa15.93■□□□□ 0.14
LSM1-203ENST00000520755 CYP4V2Q6ZWL3 525 aaPredicted RBP15.93■□□□□ 0.14
LSM1-203ENST00000520755 RNF10Q8N5U6 811 aaKnown RBP15.93■□□□□ 0.14
LSM1-203ENST00000520755 FAM172AQ8WUF8 416 aa15.93■□□□□ 0.14
LSM1-203ENST00000520755 WBP2Q969T9 261 aa15.93■□□□□ 0.14
LSM1-203ENST00000520755 PGAP3Q96FM1 320 aaPredicted RBP15.93■□□□□ 0.14
LSM1-203ENST00000520755 PEBP4Q96S96 227 aa15.93■□□□□ 0.14
LSM1-203ENST00000520755 FAM204AQ9H8W3 233 aa15.93■□□□□ 0.14
LSM1-203ENST00000520755 PIGVQ9NUD9 493 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms