RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 FAM160B1Q5W0V3 765 aa7.98□□□□□ -1.13
SDCBP-208ENST00000520228 ARMC6Q6NXE6 501 aa7.98□□□□□ -1.13
SDCBP-208ENST00000520228 TAPT1Q6NXT6 567 aa7.98□□□□□ -1.13
SDCBP-208ENST00000520228 CTR9Q6PD62 1173 aa7.98□□□□□ -1.13
SDCBP-208ENST00000520228 TUBA3EQ6PEY2 450 aa7.98□□□□□ -1.13
SDCBP-208ENST00000520228 FOXR2Q6PJQ5 311 aa7.98□□□□□ -1.13
SDCBP-208ENST00000520228 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP7.98□□□□□ -1.13
SDCBP-208ENST00000520228 ANKRD23Q86SG2 305 aa7.98□□□□□ -1.13
SDCBP-208ENST00000520228 CPEB3Q8NE35 698 aaKnown RBP7.98□□□□□ -1.13
SDCBP-208ENST00000520228 OR6B3Q8NGW1 331 aa7.98□□□□□ -1.13
SDCBP-208ENST00000520228 DYNLL2Q96FJ2 89 aa7.98□□□□□ -1.13
SDCBP-208ENST00000520228 TRIB1Q96RU8 372 aa7.98□□□□□ -1.13
SDCBP-208ENST00000520228 SMOQ99835 787 aa7.98□□□□□ -1.13
SDCBP-208ENST00000520228 NACAP1Q9BZK3 213 aa7.98□□□□□ -1.13
SDCBP-208ENST00000520228 BTBD1Q9H0C5 482 aa7.98□□□□□ -1.13
SDCBP-208ENST00000520228 R3HDMLQ9H3Y0 253 aa7.98□□□□□ -1.13
SDCBP-208ENST00000520228 AS3MTQ9HBK9 375 aa7.98□□□□□ -1.13
SDCBP-208ENST00000520228 ZCCHC17Q9NP64 241 aaKnown RBP7.98□□□□□ -1.13
SDCBP-208ENST00000520228 MYRFQ9Y2G1 1151 aa7.98□□□□□ -1.13
SDCBP-208ENST00000520228 ZBTB32Q9Y2Y4 487 aaPredicted RBP7.98□□□□□ -1.13
SDCBP-208ENST00000520228 NEU2Q9Y3R4 380 aa7.98□□□□□ -1.13
SDCBP-208ENST00000520228 THSD7BQ9C0I4 1608 aa7.98□□□□□ -1.13
SDCBP-208ENST00000520228 CYP2D7A0A087X1C5 515 aa7.97□□□□□ -1.13
SDCBP-208ENST00000520228 KRTAP4-8A0A0G2JLE6 195 aa7.97□□□□□ -1.13
SDCBP-208ENST00000520228 E7ENX8 843 aa7.97□□□□□ -1.13
SDCBP-208ENST00000520228 PDHXO00330 501 aa7.97□□□□□ -1.13
SDCBP-208ENST00000520228 BTN3A1O00481 513 aa7.97□□□□□ -1.13
SDCBP-208ENST00000520228 PMM2O15305 246 aa7.97□□□□□ -1.13
SDCBP-208ENST00000520228 TDO2P48775 406 aa7.97□□□□□ -1.13
SDCBP-208ENST00000520228 TAP2Q03519 686 aa7.97□□□□□ -1.13
SDCBP-208ENST00000520228 RESTQ13127 1097 aa7.97□□□□□ -1.13
SDCBP-208ENST00000520228 BOP1Q14137 746 aaKnown RBP7.97□□□□□ -1.13
SDCBP-208ENST00000520228 SHROOM1Q2M3G4 852 aaPredicted RBP7.97□□□□□ -1.13
SDCBP-208ENST00000520228 MCMDC2Q4G0Z9 681 aa7.97□□□□□ -1.13
SDCBP-208ENST00000520228 SBK1Q52WX2 424 aa7.97□□□□□ -1.13
SDCBP-208ENST00000520228 ZNF783Q6ZMS7 281 aa7.97□□□□□ -1.13
SDCBP-208ENST00000520228 PCSK9Q8NBP7 692 aaKnown RBP7.97□□□□□ -1.13
SDCBP-208ENST00000520228 SLC44A5Q8NCS7 719 aa7.97□□□□□ -1.13
SDCBP-208ENST00000520228 PHKBQ93100 1093 aa7.97□□□□□ -1.13
SDCBP-208ENST00000520228 FAM227BQ96M60 508 aa7.97□□□□□ -1.13
SDCBP-208ENST00000520228 ZNF747Q9BV97 191 aa7.97□□□□□ -1.13
SDCBP-208ENST00000520228 SPATA5L1Q9BVQ7 753 aa7.97□□□□□ -1.13
SDCBP-208ENST00000520228 APOL5Q9BWW9 433 aa7.97□□□□□ -1.13
SDCBP-208ENST00000520228 NAA15Q9BXJ9 866 aaKnown RBP7.97□□□□□ -1.13
SDCBP-208ENST00000520228 NUP62CLQ9H1M0 184 aa7.97□□□□□ -1.13
SDCBP-208ENST00000520228 KIAA1586Q9HCI6 787 aa7.97□□□□□ -1.13
SDCBP-208ENST00000520228 HELLSQ9NRZ9 838 aa7.97□□□□□ -1.13
SDCBP-208ENST00000520228 ARPP21Q9UBL0 812 aaPredicted RBP7.97□□□□□ -1.13
SDCBP-208ENST00000520228 HESX1Q9UBX0 185 aa7.97□□□□□ -1.13
SDCBP-208ENST00000520228 SRRDQ9UH36 339 aa7.97□□□□□ -1.13
SDCBP-208ENST00000520228 SWAP70Q9UH65 585 aa7.97□□□□□ -1.13
SDCBP-208ENST00000520228 MYH2Q9UKX2 1941 aa7.96□□□□□ -1.13
SDCBP-208ENST00000520228 MYH13Q9UKX3 1938 aa7.96□□□□□ -1.13
SDCBP-208ENST00000520228 A0A087WWL8 130 aa7.96□□□□□ -1.14
SDCBP-208ENST00000520228 A0A0D9SFI3 127 aa7.96□□□□□ -1.14
SDCBP-208ENST00000520228 PRAMEF33A0A0G2JMD5 474 aa7.96□□□□□ -1.14
SDCBP-208ENST00000520228 MYADML2A6NDP7 307 aa7.96□□□□□ -1.14
SDCBP-208ENST00000520228 MPHOSPH10O00566 681 aaKnown RBP7.96□□□□□ -1.14
SDCBP-208ENST00000520228 MATN3O15232 486 aa7.96□□□□□ -1.14
SDCBP-208ENST00000520228 PRAMEF10O60809 474 aa7.96□□□□□ -1.14
SDCBP-208ENST00000520228 PQBP1O60828 265 aaKnown RBP7.96□□□□□ -1.14
SDCBP-208ENST00000520228 GRPP07492 148 aa7.96□□□□□ -1.14
SDCBP-208ENST00000520228 RPL17P18621 184 aaKnown RBP7.96□□□□□ -1.14
SDCBP-208ENST00000520228 DDX6P26196 483 aaKnown RBP eCLIP7.96□□□□□ -1.14
SDCBP-208ENST00000520228 SLC11A2P49281 568 aa7.96□□□□□ -1.14
SDCBP-208ENST00000520228 HMGCS2P54868 508 aa7.96□□□□□ -1.14
SDCBP-208ENST00000520228 BACE1P56817 501 aa7.96□□□□□ -1.14
SDCBP-208ENST00000520228 CTBP1Q13363 440 aa7.96□□□□□ -1.14
SDCBP-208ENST00000520228 CCDC129Q6ZRS4 1044 aa7.96□□□□□ -1.14
SDCBP-208ENST00000520228 CENPQQ7L2Z9 268 aaPredicted RBP7.96□□□□□ -1.14
SDCBP-208ENST00000520228 MRGPREQ86SM8 312 aa7.96□□□□□ -1.14
SDCBP-208ENST00000520228 SESTD1Q86VW0 696 aa7.96□□□□□ -1.14
SDCBP-208ENST00000520228 FAM46DQ8NEK8 389 aa7.96□□□□□ -1.14
SDCBP-208ENST00000520228 NMD3Q96D46 503 aaKnown RBP7.96□□□□□ -1.14
SDCBP-208ENST00000520228 MSLNLQ96KJ4 702 aa7.96□□□□□ -1.14
SDCBP-208ENST00000520228 CCDC17Q96LX7 622 aa7.96□□□□□ -1.14
SDCBP-208ENST00000520228 ALOXE3Q9BYJ1 711 aa7.96□□□□□ -1.14
SDCBP-208ENST00000520228 GALNT9Q9HCQ5 603 aa7.96□□□□□ -1.14
SDCBP-208ENST00000520228 SLC2A4RGQ9NR83 387 aa7.96□□□□□ -1.14
SDCBP-208ENST00000520228 CHST12Q9NRB3 414 aa7.96□□□□□ -1.14
SDCBP-208ENST00000520228 DIAPH3Q9NSV4 1193 aa7.96□□□□□ -1.14
SDCBP-208ENST00000520228 TMOD4Q9NZQ9 345 aa7.96□□□□□ -1.14
SDCBP-208ENST00000520228 AGTPBP1Q9UPW5 1226 aa7.96□□□□□ -1.14
SDCBP-208ENST00000520228 MAST2Q6P0Q8 1798 aa7.95□□□□□ -1.14
SDCBP-208ENST00000520228 ECM29Q5VYK3 1845 aa7.95□□□□□ -1.14
SDCBP-208ENST00000520228 CENPVL1A0A0U1RR11 272 aa7.95□□□□□ -1.14
SDCBP-208ENST00000520228 TRIM43BA6NCK2 446 aa7.95□□□□□ -1.14
SDCBP-208ENST00000520228 C19orf81C9J6K1 198 aa7.95□□□□□ -1.14
SDCBP-208ENST00000520228 SMIM22K7EJ46 135 aa7.95□□□□□ -1.14
SDCBP-208ENST00000520228 HIP1O00291 1037 aa7.95□□□□□ -1.14
SDCBP-208ENST00000520228 TLR2O60603 784 aa7.95□□□□□ -1.14
SDCBP-208ENST00000520228 LPXNO60711 386 aa7.95□□□□□ -1.14
SDCBP-208ENST00000520228 PPFIA4O75335 1185 aa7.95□□□□□ -1.14
SDCBP-208ENST00000520228 SLC3A2P08195 630 aaKnown RBP7.95□□□□□ -1.14
SDCBP-208ENST00000520228 INSRRP14616 1297 aa7.95□□□□□ -1.14
SDCBP-208ENST00000520228 BRAFP15056 766 aa7.95□□□□□ -1.14
SDCBP-208ENST00000520228 AKR1B1P15121 316 aa7.95□□□□□ -1.14
SDCBP-208ENST00000520228 PTGS2P35354 604 aa7.95□□□□□ -1.14
SDCBP-208ENST00000520228 ANXA11P50995 505 aaKnown RBP7.95□□□□□ -1.14
SDCBP-208ENST00000520228 UCP3P55916 312 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms