RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 TMA16Q96EY4 203 aaKnown RBP9.76□□□□□ -0.85
HDAC3-215ENST00000519474 LOXL4Q96JB6 756 aa9.76□□□□□ -0.85
HDAC3-215ENST00000519474 FAM81BQ96LP2 452 aa9.76□□□□□ -0.85
HDAC3-215ENST00000519474 TUBGCP2Q9BSJ2 902 aa9.76□□□□□ -0.85
HDAC3-215ENST00000519474 ARRDC1-AS1Q9H2J1 176 aa9.76□□□□□ -0.85
HDAC3-215ENST00000519474 CD248Q9HCU0 757 aa9.76□□□□□ -0.85
HDAC3-215ENST00000519474 SEMA4GQ9NTN9 838 aa9.76□□□□□ -0.85
HDAC3-215ENST00000519474 APEX2Q9UBZ4 518 aa9.76□□□□□ -0.85
HDAC3-215ENST00000519474 STOML2Q9UJZ1 356 aa9.76□□□□□ -0.85
HDAC3-215ENST00000519474 DNAJC12Q9UKB3 198 aa9.76□□□□□ -0.85
HDAC3-215ENST00000519474 NAALADL1Q9UQQ1 740 aa9.76□□□□□ -0.85
HDAC3-215ENST00000519474 SLC27A6Q9Y2P4 619 aa9.76□□□□□ -0.85
HDAC3-215ENST00000519474 GPR179Q6PRD1 2367 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 SDK1Q7Z5N4 2213 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 MYO16Q9Y6X6 1858 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 OTOGLQ3ZCN5 2332 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 GOLGA6L7A0A1B0GV03 622 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 A0A1W2PQF6 199 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 PAPSS1O43252 624 aaPredicted RBP9.75□□□□□ -0.85
HDAC3-215ENST00000519474 THAP12O43422 761 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 MED7O43513 233 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 TSPAN3O60637 253 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 LRP3O75074 770 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 FBXO21O94952 628 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 IGLV3-27P01718 113 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 NTSR1P30989 418 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 ACADSBP45954 432 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 HARS2P49590 506 aaKnown RBP9.75□□□□□ -0.85
HDAC3-215ENST00000519474 CSRP2Q16527 193 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 GEN1Q17RS7 908 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 RSPO4Q2I0M5 234 aaPredicted RBP9.75□□□□□ -0.85
HDAC3-215ENST00000519474 USP39Q53GS9 565 aaKnown RBP9.75□□□□□ -0.85
HDAC3-215ENST00000519474 ADGRF1Q5T601 910 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 EGFLAMQ63HQ2 1017 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 TMEM215Q68D42 235 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 SMYD5Q6GMV2 418 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 ANO7Q6IWH7 933 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 ABCA7Q8IZY2 2146 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 FRMD1Q8N878 549 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 MDGA1Q8NFP4 955 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 ENOX1Q8TC92 643 aaKnown RBP9.75□□□□□ -0.85
HDAC3-215ENST00000519474 RLN3Q8WXF3 142 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 AZIN2Q96A70 460 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 PIWIL1Q96J94 861 aaKnown RBP9.75□□□□□ -0.85
HDAC3-215ENST00000519474 TPSD1Q9BZJ3 242 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 POLMQ9NP87 494 aaPredicted RBP9.75□□□□□ -0.85
HDAC3-215ENST00000519474 ST7Q9NRC1 585 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 DLL3Q9NYJ7 618 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 TJP2Q9UDY2 1190 aa9.75□□□□□ -0.85
HDAC3-215ENST00000519474 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.75□□□□□ -0.85
HDAC3-215ENST00000519474 EP300Q09472 2414 aaPredicted RBP9.75□□□□□ -0.85
HDAC3-215ENST00000519474 USP34Q70CQ2 3546 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 EML5Q05BV3 1969 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 KCNJ18B7U540 433 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 MSI1O43347 362 aaKnown RBP9.74□□□□□ -0.85
HDAC3-215ENST00000519474 ALDH1A2O94788 518 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 ZNF806P0C7X5 589 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 GABRG2P18507 467 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 GNA15P30679 374 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 USP8P40818 1118 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 ATXN1P54253 815 aaKnown RBP9.74□□□□□ -0.85
HDAC3-215ENST00000519474 EIF4EBP2Q13542 120 aaPredicted RBP9.74□□□□□ -0.85
HDAC3-215ENST00000519474 KCNJ12Q14500 433 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 PUM1Q14671 1186 aaKnown RBP eCLIP9.74□□□□□ -0.85
HDAC3-215ENST00000519474 DRAP1Q14919 205 aaPredicted RBP9.74□□□□□ -0.85
HDAC3-215ENST00000519474 TAF5Q15542 800 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 CCDC6Q16204 474 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 MEA1Q16626 185 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 MPPE1Q53F39 396 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 TCP11X2Q5H9J9 407 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 PLA2G2CQ5R387 149 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 KLHDC7AQ5VTJ3 777 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 KIAA1211LQ6NV74 962 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 BEND5Q7L4P6 421 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.74□□□□□ -0.85
HDAC3-215ENST00000519474 KIAA0907Q7Z7F0 614 aaPredicted RBP9.74□□□□□ -0.85
HDAC3-215ENST00000519474 FAM114A1Q8IWE2 563 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 UNC45BQ8IWX7 931 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 DDI1Q8WTU0 396 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 SLC39A13Q96H72 371 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 GABRG3Q99928 467 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 SLC2A11Q9BYW1 496 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 LHX5Q9H2C1 402 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 ELOVL2Q9NXB9 296 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 DACH1Q9UI36 760 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 MBD1Q9UIS9 605 aaPredicted RBP9.74□□□□□ -0.85
HDAC3-215ENST00000519474 USP18Q9UMW8 372 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 PCDHGC3Q9UN70 934 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 MYO15AQ9UKN7 3530 aa9.74□□□□□ -0.85
HDAC3-215ENST00000519474 TCRBV21S2A2A0A5A6 115 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 PRR5-ARHGAP8B1AHC4 643 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 E5RJQ4 531 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 TIMM44O43615 452 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 GDF9O60383 454 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 ACSL4O60488 711 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 RHOBTB1O94844 696 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 EPN2O95208 641 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 LATS1O95835 1130 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 CYBBP04839 570 aa9.73□□□□□ -0.85
HDAC3-215ENST00000519474 PNMA6AP0CW24 399 aaPredicted RBP9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms