RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 BSPRYQ5W0U4 402 aa18.28■□□□□ 0.52
DDX41-217ENST00000515562 SLC36A4Q6YBV0 504 aa18.28■□□□□ 0.52
DDX41-217ENST00000515562 FMNL3Q8IVF7 1028 aa18.28■□□□□ 0.52
DDX41-217ENST00000515562 RBBP8NLQ8NC74 664 aaPredicted RBP18.28■□□□□ 0.52
DDX41-217ENST00000515562 IPO4Q8TEX9 1081 aaKnown RBP18.28■□□□□ 0.52
DDX41-217ENST00000515562 IRGQQ8WZA9 623 aa18.28■□□□□ 0.52
DDX41-217ENST00000515562 TFAP2BQ92481 460 aa18.28■□□□□ 0.52
DDX41-217ENST00000515562 ACOX2Q99424 681 aa18.28■□□□□ 0.52
DDX41-217ENST00000515562 CD248Q9HCU0 757 aa18.28■□□□□ 0.52
DDX41-217ENST00000515562 TNRC6BQ9UPQ9 1833 aaKnown RBP18.28■□□□□ 0.52
DDX41-217ENST00000515562 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa18.27■□□□□ 0.52
DDX41-217ENST00000515562 AP5Z1O43299 807 aa18.27■□□□□ 0.52
DDX41-217ENST00000515562 ZNF217O75362 1048 aa18.27■□□□□ 0.52
DDX41-217ENST00000515562 LATS1O95835 1130 aa18.27■□□□□ 0.52
DDX41-217ENST00000515562 LCP1P13796 627 aa18.27■□□□□ 0.52
DDX41-217ENST00000515562 HOXD12P35452 270 aa18.27■□□□□ 0.52
DDX41-217ENST00000515562 STX17P56962 302 aa18.27■□□□□ 0.52
DDX41-217ENST00000515562 DAOAP59103 153 aa18.27■□□□□ 0.52
DDX41-217ENST00000515562 UBE2HP62256 183 aa18.27■□□□□ 0.52
DDX41-217ENST00000515562 EIF4HQ15056 248 aaKnown RBP18.27■□□□□ 0.52
DDX41-217ENST00000515562 ANKS1BQ7Z6G8 1248 aa18.27■□□□□ 0.52
DDX41-217ENST00000515562 TMEFF1Q8IYR6 380 aa18.27■□□□□ 0.52
DDX41-217ENST00000515562 SLC35F5Q8WV83 523 aa18.27■□□□□ 0.52
DDX41-217ENST00000515562 UCMAQ8WVF2 138 aa18.27■□□□□ 0.52
DDX41-217ENST00000515562 NDRG1Q92597 394 aaKnown RBP18.27■□□□□ 0.52
DDX41-217ENST00000515562 EDEM1Q92611 657 aa18.27■□□□□ 0.52
DDX41-217ENST00000515562 PIGKQ92643 395 aa18.27■□□□□ 0.52
DDX41-217ENST00000515562 KAT5Q92993 513 aa18.27■□□□□ 0.52
DDX41-217ENST00000515562 P2RY11Q96G91 374 aa18.27■□□□□ 0.52
DDX41-217ENST00000515562 SLC2A11Q9BYW1 496 aa18.27■□□□□ 0.52
DDX41-217ENST00000515562 CACNA2D2Q9NY47 1150 aa18.27■□□□□ 0.52
DDX41-217ENST00000515562 MBD1Q9UIS9 605 aaPredicted RBP18.27■□□□□ 0.52
DDX41-217ENST00000515562 TM4SF5O14894 197 aa18.26■□□□□ 0.51
DDX41-217ENST00000515562 NDUFV2P19404 249 aa18.26■□□□□ 0.51
DDX41-217ENST00000515562 BRD2P25440 801 aaKnown RBP18.26■□□□□ 0.51
DDX41-217ENST00000515562 ZNF132P52740 706 aa18.26■□□□□ 0.51
DDX41-217ENST00000515562 STARD3Q14849 445 aa18.26■□□□□ 0.51
DDX41-217ENST00000515562 LYSMD4Q5XG99 296 aa18.26■□□□□ 0.51
DDX41-217ENST00000515562 KIAA1211LQ6NV74 962 aa18.26■□□□□ 0.51
DDX41-217ENST00000515562 PMF1Q6P1K2 205 aa18.26■□□□□ 0.51
DDX41-217ENST00000515562 MSANTD2Q6P1R3 559 aa18.26■□□□□ 0.51
DDX41-217ENST00000515562 RRAGAQ7L523 313 aa18.26■□□□□ 0.51
DDX41-217ENST00000515562 SYT12Q8IV01 421 aa18.26■□□□□ 0.51
DDX41-217ENST00000515562 ARHGEF19Q8IW93 802 aa18.26■□□□□ 0.51
DDX41-217ENST00000515562 FRMD1Q8N878 549 aa18.26■□□□□ 0.51
DDX41-217ENST00000515562 EHBP1Q8NDI1 1231 aa18.26■□□□□ 0.51
DDX41-217ENST00000515562 DDI1Q8WTU0 396 aa18.26■□□□□ 0.51
DDX41-217ENST00000515562 GOLGA1Q92805 767 aa18.26■□□□□ 0.51
DDX41-217ENST00000515562 HSFY1Q96LI6 401 aa18.26■□□□□ 0.51
DDX41-217ENST00000515562 ZSWIM1Q9BR11 485 aa18.26■□□□□ 0.51
DDX41-217ENST00000515562 SRRTQ9BXP5 876 aaKnown RBP18.26■□□□□ 0.51
DDX41-217ENST00000515562 INTS2Q9H0H0 1204 aaKnown RBP18.26■□□□□ 0.51
DDX41-217ENST00000515562 SFMBT1Q9UHJ3 866 aa18.26■□□□□ 0.51
DDX41-217ENST00000515562 EVLQ9UI08 416 aaPredicted RBP18.26■□□□□ 0.51
DDX41-217ENST00000515562 STOML2Q9UJZ1 356 aa18.26■□□□□ 0.51
DDX41-217ENST00000515562 SPTBN2O15020 2390 aa18.25■□□□□ 0.51
DDX41-217ENST00000515562 RNF225M0QZC1 329 aaPredicted RBP18.25■□□□□ 0.51
DDX41-217ENST00000515562 FBXO21O94952 628 aa18.25■□□□□ 0.51
DDX41-217ENST00000515562 KCNA4P22459 653 aa18.25■□□□□ 0.51
DDX41-217ENST00000515562 PTGER3P43115 390 aa18.25■□□□□ 0.51
DDX41-217ENST00000515562 RGS7P49802 495 aa18.25■□□□□ 0.51
DDX41-217ENST00000515562 RPL6Q02878 288 aaKnown RBP18.25■□□□□ 0.51
DDX41-217ENST00000515562 GEN1Q17RS7 908 aa18.25■□□□□ 0.51
DDX41-217ENST00000515562 MPPE1Q53F39 396 aa18.25■□□□□ 0.51
DDX41-217ENST00000515562 ARMCX6Q7L4S7 300 aa18.25■□□□□ 0.51
DDX41-217ENST00000515562 PIWIL1Q96J94 861 aaKnown RBP18.25■□□□□ 0.51
DDX41-217ENST00000515562 LSM14BQ9BX40 385 aaKnown RBP18.25■□□□□ 0.51
DDX41-217ENST00000515562 KIAA1468Q9P260 1216 aa18.25■□□□□ 0.51
DDX41-217ENST00000515562 RWDD2AQ9UIY3 292 aa18.25■□□□□ 0.51
DDX41-217ENST00000515562 RAD54BQ9Y620 910 aa18.25■□□□□ 0.51
DDX41-217ENST00000515562 STON1Q9Y6Q2 735 aa18.25■□□□□ 0.51
DDX41-217ENST00000515562 SART1O43290 800 aaKnown RBP18.24■□□□□ 0.51
DDX41-217ENST00000515562 MSI1O43347 362 aaKnown RBP18.24■□□□□ 0.51
DDX41-217ENST00000515562 LTFP02788 710 aa18.24■□□□□ 0.51
DDX41-217ENST00000515562 LMAN2Q12907 356 aa18.24■□□□□ 0.51
DDX41-217ENST00000515562 MEA1Q16626 185 aa18.24■□□□□ 0.51
DDX41-217ENST00000515562 TRIM61Q5EBN2 209 aa18.24■□□□□ 0.51
DDX41-217ENST00000515562 ADGRF1Q5T601 910 aa18.24■□□□□ 0.51
DDX41-217ENST00000515562 DAB2IPQ5VWQ8 1189 aa18.24■□□□□ 0.51
DDX41-217ENST00000515562 PEAR1Q5VY43 1037 aaPredicted RBP18.24■□□□□ 0.51
DDX41-217ENST00000515562 NUGGCQ68CJ6 796 aa18.24■□□□□ 0.51
DDX41-217ENST00000515562 ENOSF1Q7L5Y1 443 aa18.24■□□□□ 0.51
DDX41-217ENST00000515562 RABEPKQ7Z6M1 372 aa18.24■□□□□ 0.51
DDX41-217ENST00000515562 MRGPRX1Q96LB2 322 aa18.24■□□□□ 0.51
DDX41-217ENST00000515562 FAM81BQ96LP2 452 aa18.24■□□□□ 0.51
DDX41-217ENST00000515562 KREMEN1Q96MU8 473 aa18.24■□□□□ 0.51
DDX41-217ENST00000515562 TMEM9BQ9NQ34 198 aa18.24■□□□□ 0.51
DDX41-217ENST00000515562 THAP10Q9P2Z0 257 aaPredicted RBP18.24■□□□□ 0.51
DDX41-217ENST00000515562 CNTN6Q9UQ52 1028 aa18.24■□□□□ 0.51
DDX41-217ENST00000515562 IGHV1OR15-9A0A0B4J2B8 117 aa18.23■□□□□ 0.51
DDX41-217ENST00000515562 PATE3B3GLJ2 98 aa18.23■□□□□ 0.51
DDX41-217ENST00000515562 KRT5P13647 590 aa18.23■□□□□ 0.51
DDX41-217ENST00000515562 HOXD9P28356 352 aaPredicted RBP18.23■□□□□ 0.51
DDX41-217ENST00000515562 ENPP2Q13822 863 aa18.23■□□□□ 0.51
DDX41-217ENST00000515562 TRIM62Q9BVG3 475 aa18.23■□□□□ 0.51
DDX41-217ENST00000515562 NUSAP1Q9BXS6 441 aaKnown RBP18.23■□□□□ 0.51
DDX41-217ENST00000515562 IRX2Q9BZI1 471 aaPredicted RBP18.23■□□□□ 0.51
DDX41-217ENST00000515562 CIPCQ9C0C6 399 aa18.23■□□□□ 0.51
DDX41-217ENST00000515562 ELOVL2Q9NXB9 296 aa18.23■□□□□ 0.51
DDX41-217ENST00000515562 PILRBQ9UKJ0 227 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 115.9 ms