RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 SMARCE1Q969G3 411 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 DHTKD1Q96HY7 919 aaPredicted RBP5.92□□□□□ -1.46
NUP54-218ENST00000515460 MMADHCQ9H3L0 296 aaPredicted RBP5.92□□□□□ -1.46
NUP54-218ENST00000515460 TSPY26PQ9H489 355 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 HOXC10Q9NYD6 342 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 DBNLQ9UJU6 430 aaKnown RBP5.92□□□□□ -1.46
NUP54-218ENST00000515460 SPTA1P02549 2419 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 UBR5O95071 2799 aaPredicted RBP5.91□□□□□ -1.46
NUP54-218ENST00000515460 OTOGLQ3ZCN5 2332 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 A0A1W2PRG0 241 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 SLC15A5A6NIM6 579 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 LIN7AO14910 233 aaPredicted RBP5.91□□□□□ -1.46
NUP54-218ENST00000515460 MFAP3LO75121 409 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 MTRF1O75570 445 aaKnown RBP5.91□□□□□ -1.46
NUP54-218ENST00000515460 FKBP9O95302 570 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 PDGFBP01127 241 aaPredicted RBP5.91□□□□□ -1.46
NUP54-218ENST00000515460 IGHDP01880 384 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 HLA-DOAP06340 250 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 PYGLP06737 847 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 HOXC6P09630 235 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 ZFXP17010 805 aaPredicted RBP5.91□□□□□ -1.46
NUP54-218ENST00000515460 CYP11B2P19099 503 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 POU3F3P20264 500 aaPredicted RBP5.91□□□□□ -1.46
NUP54-218ENST00000515460 SHMT1P34896 483 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 GPR15P49685 360 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 CLNS1AP54105 237 aaKnown RBP5.91□□□□□ -1.46
NUP54-218ENST00000515460 NRG3P56975 720 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 ROR2Q01974 943 aaKnown RBP5.91□□□□□ -1.46
NUP54-218ENST00000515460 RAB30Q15771 203 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 SEPT7Q16181 437 aaKnown RBP5.91□□□□□ -1.46
NUP54-218ENST00000515460 CERKLQ49MI3 558 aaPredicted RBP5.91□□□□□ -1.46
NUP54-218ENST00000515460 KIAA1755Q5JYT7 1200 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 TMCO3Q6UWJ1 677 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 LRRC31Q6UY01 552 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 SLC39A5Q6ZMH5 540 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 FRMD7Q6ZUT3 714 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 FKBP9P1Q75LS8 142 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 ZNF575Q86XF7 245 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 IQCA1Q86XH1 822 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 CCAR1Q8IX12 1150 aaKnown RBP5.91□□□□□ -1.46
NUP54-218ENST00000515460 ULK2Q8IYT8 1036 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 MB21D1Q8N884 522 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 SMYD1Q8NB12 490 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 ATP11CQ8NB49 1132 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 CCDC150Q8NCX0 1101 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 OR8K1Q8NGG5 319 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 PPP1R14BQ96C90 147 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 CCDC114Q96M63 670 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 ALS2CR12Q96Q35 445 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 RUFY1Q96T51 708 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 SH3GL1Q99961 368 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 RIOK1Q9BRS2 568 aaKnown RBP5.91□□□□□ -1.46
NUP54-218ENST00000515460 WNT8AQ9H1J5 351 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 RABEP2Q9H5N1 569 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 GPRC5BQ9NZH0 403 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 DKK3Q9UBP4 350 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 FBXO9Q9UK97 447 aaPredicted RBP5.91□□□□□ -1.46
NUP54-218ENST00000515460 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.91□□□□□ -1.46
NUP54-218ENST00000515460 LAMA5O15230 3695 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 AK9Q5TCS8 1911 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 FBN3Q75N90 2809 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 KALRNO60229 2985 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 C2CD3Q4AC94 2353 aa5.91□□□□□ -1.46
NUP54-218ENST00000515460 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.9□□□□□ -1.46
NUP54-218ENST00000515460 CFAP69A5D8W1 941 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 H3BQ06 376 aaPredicted RBP5.9□□□□□ -1.46
NUP54-218ENST00000515460 IDH1O75874 414 aaKnown RBP5.9□□□□□ -1.46
NUP54-218ENST00000515460 SLU7O95391 586 aaKnown RBP5.9□□□□□ -1.46
NUP54-218ENST00000515460 PEX11BO96011 259 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 PFKMP08237 780 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 FERP16591 822 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 KRT4P19013 534 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 TRIM21P19474 475 aaKnown RBP5.9□□□□□ -1.46
NUP54-218ENST00000515460 USP14P54578 494 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 GABPAQ06546 454 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 TOB2Q14106 344 aaPredicted RBP5.9□□□□□ -1.46
NUP54-218ENST00000515460 SPIDRQ14159 915 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 GRB14Q14449 540 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 SEPT2Q15019 361 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 ABCB5Q2M3G0 1257 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 TMEM240Q5SV17 173 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 MFSD14CQ5VZR4 134 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 LAIR1Q6GTX8 287 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 ISM2Q6H9L7 571 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 CPLX2Q6PUV4 134 aaKnown RBP5.9□□□□□ -1.46
NUP54-218ENST00000515460 Q6ZPA2 131 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 LCA5Q86VQ0 697 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 LMNTD2Q8IXW0 634 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 PEX5LQ8IYB4 626 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 MYO1HQ8N1T3 1032 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 MAGEB6Q8N7X4 407 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 PRPF38AQ8NAV1 312 aaKnown RBP5.9□□□□□ -1.46
NUP54-218ENST00000515460 PPP1R14CQ8TAE6 165 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 NEK9Q8TD19 979 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 PARD3BQ8TEW8 1205 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 LEO1Q8WVC0 666 aaPredicted RBP5.9□□□□□ -1.46
NUP54-218ENST00000515460 RSAD2Q8WXG1 361 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 LPAR1Q92633 364 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 NACC2Q96BF6 587 aa5.9□□□□□ -1.46
NUP54-218ENST00000515460 LSM14BQ9BX40 385 aaKnown RBP5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms