RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 TBX4P57082 545 aa11.99□□□□□ -0.49
VCAN-212ENST00000515397 MRPS21P82921 87 aaKnown RBP11.99□□□□□ -0.49
VCAN-212ENST00000515397 PTK2Q05397 1052 aa11.99□□□□□ -0.49
VCAN-212ENST00000515397 TYRO3Q06418 890 aa11.99□□□□□ -0.49
VCAN-212ENST00000515397 STX1AQ16623 288 aa11.99□□□□□ -0.49
VCAN-212ENST00000515397 C2CD6Q53TS8 623 aa11.99□□□□□ -0.49
VCAN-212ENST00000515397 KBTBD6Q86V97 674 aa11.99□□□□□ -0.49
VCAN-212ENST00000515397 FAM71AQ8IYT1 594 aa11.99□□□□□ -0.49
VCAN-212ENST00000515397 FRMD1Q8N878 549 aa11.99□□□□□ -0.49
VCAN-212ENST00000515397 ZNF513Q8N8E2 541 aaPredicted RBP11.99□□□□□ -0.49
VCAN-212ENST00000515397 TERB1Q8NA31 727 aa11.99□□□□□ -0.49
VCAN-212ENST00000515397 C1orf131Q8NDD1 294 aaKnown RBP11.99□□□□□ -0.49
VCAN-212ENST00000515397 DDI1Q8WTU0 396 aa11.99□□□□□ -0.49
VCAN-212ENST00000515397 RLN3Q8WXF3 142 aa11.99□□□□□ -0.49
VCAN-212ENST00000515397 IRGQQ8WZA9 623 aa11.99□□□□□ -0.49
VCAN-212ENST00000515397 ACDQ96AP0 544 aa11.99□□□□□ -0.49
VCAN-212ENST00000515397 PLD4Q96BZ4 506 aa11.99□□□□□ -0.49
VCAN-212ENST00000515397 MYEOVQ96EZ4 313 aa11.99□□□□□ -0.49
VCAN-212ENST00000515397 CPXM1Q96SM3 734 aa11.99□□□□□ -0.49
VCAN-212ENST00000515397 PARD6AQ9NPB6 346 aa11.99□□□□□ -0.49
VCAN-212ENST00000515397 FAM207AQ9NSI2 230 aaPredicted RBP11.99□□□□□ -0.49
VCAN-212ENST00000515397 OLA1Q9NTK5 396 aaKnown RBP11.99□□□□□ -0.49
VCAN-212ENST00000515397 MARK1Q9P0L2 795 aa11.99□□□□□ -0.49
VCAN-212ENST00000515397 COX16Q9P0S2 106 aa11.99□□□□□ -0.49
VCAN-212ENST00000515397 RAB23Q9ULC3 237 aa11.99□□□□□ -0.49
VCAN-212ENST00000515397 MMP17Q9ULZ9 603 aa11.99□□□□□ -0.49
VCAN-212ENST00000515397 ZNF510Q9Y2H8 683 aa11.99□□□□□ -0.49
VCAN-212ENST00000515397 FANCMQ8IYD8 2048 aa11.99□□□□□ -0.49
VCAN-212ENST00000515397 CAPN9O14815 690 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 RPP40O75818 363 aaKnown RBP11.98□□□□□ -0.49
VCAN-212ENST00000515397 FBXO21O94952 628 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 APBB3O95704 486 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 MBD3O95983 291 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 MOCS2O96007 188 aaPredicted RBP11.98□□□□□ -0.49
VCAN-212ENST00000515397 PENKP01210 267 aaPredicted RBP11.98□□□□□ -0.49
VCAN-212ENST00000515397 ERBB2P04626 1255 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 UCHL3P15374 230 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 CDK11BP21127 795 aaKnown RBP11.98□□□□□ -0.49
VCAN-212ENST00000515397 HOXA6P31267 233 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 ACADSBP45954 432 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 RPL34P49207 117 aaKnown RBP11.98□□□□□ -0.49
VCAN-212ENST00000515397 NUMBP49757 651 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 COPB1P53618 953 aaKnown RBP11.98□□□□□ -0.49
VCAN-212ENST00000515397 SPEM2Q0P670 501 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 PDCLQ13371 301 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 NCAPHQ15003 741 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 CRY1Q16526 586 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 GEN1Q17RS7 908 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 CT47A1Q5JQC4 288 aaPredicted RBP11.98□□□□□ -0.49
VCAN-212ENST00000515397 OR6B2Q6IFH4 312 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 TMEM110Q86TL2 294 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 SCML4Q8N228 414 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 PGBD3Q8N328 593 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 CAMKK1Q8N5S9 505 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 FAM160A2Q8N612 972 aaPredicted RBP11.98□□□□□ -0.49
VCAN-212ENST00000515397 AOPEPQ8N6M6 819 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 DQX1Q8TE96 717 aaKnown RBP11.98□□□□□ -0.49
VCAN-212ENST00000515397 HMGB4Q8WW32 186 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 SORCS1Q8WY21 1168 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 GOLGA1Q92805 767 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 PPP1R13BQ96KQ4 1090 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 NAA15Q9BXJ9 866 aaKnown RBP11.98□□□□□ -0.49
VCAN-212ENST00000515397 SLC6A17Q9H1V8 727 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 NLRC4Q9NPP4 1024 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 CACNA2D2Q9NY47 1150 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 STIM2Q9P246 746 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 XPO7Q9UIA9 1087 aaKnown RBP11.98□□□□□ -0.49
VCAN-212ENST00000515397 HBS1LQ9Y450 684 aaKnown RBP11.98□□□□□ -0.49
VCAN-212ENST00000515397 RAD54BQ9Y620 910 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 ABCA7Q8IZY2 2146 aa11.98□□□□□ -0.49
VCAN-212ENST00000515397 TCRBV21S2A2A0A5A6 115 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 ATP1A3P13637 1013 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 SLC6A4P31645 630 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 CHKAP35790 457 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 RNASE9P60153 205 aaKnown RBP11.97□□□□□ -0.49
VCAN-212ENST00000515397 POLR2FP61218 127 aaKnown RBP11.97□□□□□ -0.49
VCAN-212ENST00000515397 MYL5Q02045 173 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 PTPN20Q4JDL3 420 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 ANO6Q4KMQ2 910 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 ZC3H12AQ5D1E8 599 aaKnown RBP11.97□□□□□ -0.49
VCAN-212ENST00000515397 NADSYN1Q6IA69 706 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 KIAA1211LQ6NV74 962 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 MSANTD2Q6P1R3 559 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 FAM183BPQ6ZVS7 135 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.97□□□□□ -0.49
VCAN-212ENST00000515397 PHLDB2Q86SQ0 1253 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 NOP9Q86U38 636 aaKnown RBP11.97□□□□□ -0.49
VCAN-212ENST00000515397 TAC4Q86UU9 113 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 CHPFQ8IZ52 775 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 DEFB106AQ8N104 65 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 MDGA1Q8NFP4 955 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 STK32AQ8WU08 396 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 SLC20A1Q8WUM9 679 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 GAB3Q8WWW8 586 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 TMA16Q96EY4 203 aaKnown RBP11.97□□□□□ -0.49
VCAN-212ENST00000515397 FCRL2Q96LA5 508 aaPredicted RBP11.97□□□□□ -0.49
VCAN-212ENST00000515397 FAM81BQ96LP2 452 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 PCMTD1Q96MG8 357 aaPredicted RBP11.97□□□□□ -0.49
VCAN-212ENST00000515397 GANQ9H2C0 597 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 HSD3B7Q9H2F3 369 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms