RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 NXPE3Q969Y0 559 aa30.83■■■□□ 2.53
LIMCH1-211ENST00000509638 PIGVQ9NUD9 493 aa30.83■■■□□ 2.53
LIMCH1-211ENST00000509638 ANAPC7Q9UJX3 599 aa30.83■■■□□ 2.53
LIMCH1-211ENST00000509638 NCOR1O75376 2440 aa30.83■■■□□ 2.53
LIMCH1-211ENST00000509638 MUC3AQ02505 3323 aa30.83■■■□□ 2.53
LIMCH1-211ENST00000509638 PSMC3P17980 439 aa30.83■■■□□ 2.53
LIMCH1-211ENST00000509638 GBP1P32455 592 aa30.83■■■□□ 2.53
LIMCH1-211ENST00000509638 ZNF252P-AS1Q0IIN9 211 aa30.83■■■□□ 2.53
LIMCH1-211ENST00000509638 RFFLQ8WZ73 363 aa30.83■■■□□ 2.53
LIMCH1-211ENST00000509638 NECAB3Q96P71 396 aaPredicted RBP30.83■■■□□ 2.53
LIMCH1-211ENST00000509638 UVRAGQ9P2Y5 699 aa30.83■■■□□ 2.53
LIMCH1-211ENST00000509638 LSM7Q9UK45 103 aaKnown RBP30.83■■■□□ 2.53
LIMCH1-211ENST00000509638 CCP110O43303 1012 aa30.82■■■□□ 2.52
LIMCH1-211ENST00000509638 CORO1AP31146 461 aaKnown RBP30.82■■■□□ 2.52
LIMCH1-211ENST00000509638 KRT83P78385 493 aa30.82■■■□□ 2.52
LIMCH1-211ENST00000509638 DEUP1Q05D60 604 aa30.82■■■□□ 2.52
LIMCH1-211ENST00000509638 RING1Q06587 406 aa30.82■■■□□ 2.52
LIMCH1-211ENST00000509638 FCHO2Q0JRZ9 810 aa30.82■■■□□ 2.52
LIMCH1-211ENST00000509638 EIF4EBP2Q13542 120 aaPredicted RBP30.82■■■□□ 2.52
LIMCH1-211ENST00000509638 SH3PXD2AQ5TCZ1 1133 aa30.82■■■□□ 2.52
LIMCH1-211ENST00000509638 BNIPLQ7Z465 357 aa30.82■■■□□ 2.52
LIMCH1-211ENST00000509638 PGAP3Q96FM1 320 aaPredicted RBP30.82■■■□□ 2.52
LIMCH1-211ENST00000509638 FCRL2Q96LA5 508 aaPredicted RBP30.82■■■□□ 2.52
LIMCH1-211ENST00000509638 CNPY3Q9BT09 278 aa30.82■■■□□ 2.52
LIMCH1-211ENST00000509638 KCNF1Q9H3M0 494 aa30.82■■■□□ 2.52
LIMCH1-211ENST00000509638 BDP1A6H8Y1 2624 aa30.81■■■□□ 2.52
LIMCH1-211ENST00000509638 E2F8A0AVK6 867 aa30.81■■■□□ 2.52
LIMCH1-211ENST00000509638 GREM1O60565 184 aa30.81■■■□□ 2.52
LIMCH1-211ENST00000509638 PSMA2P25787 234 aa30.81■■■□□ 2.52
LIMCH1-211ENST00000509638 RDXP35241 583 aaKnown RBP30.81■■■□□ 2.52
LIMCH1-211ENST00000509638 KIAA1328Q86T90 577 aa30.81■■■□□ 2.52
LIMCH1-211ENST00000509638 FNIP1Q8TF40 1166 aa30.81■■■□□ 2.52
LIMCH1-211ENST00000509638 FAM172AQ8WUF8 416 aa30.81■■■□□ 2.52
LIMCH1-211ENST00000509638 SLC39A13Q96H72 371 aa30.81■■■□□ 2.52
LIMCH1-211ENST00000509638 OSGEPQ9NPF4 335 aa30.81■■■□□ 2.52
LIMCH1-211ENST00000509638 TICRRQ7Z2Z1 1910 aa30.8■■■□□ 2.52
LIMCH1-211ENST00000509638 VAV2P52735 878 aa30.8■■■□□ 2.52
LIMCH1-211ENST00000509638 ATXN1P54253 815 aaKnown RBP30.8■■■□□ 2.52
LIMCH1-211ENST00000509638 ZC3H12AQ5D1E8 599 aaKnown RBP30.8■■■□□ 2.52
LIMCH1-211ENST00000509638 NUGGCQ68CJ6 796 aa30.8■■■□□ 2.52
LIMCH1-211ENST00000509638 CC2D1AQ6P1N0 951 aaPredicted RBP30.8■■■□□ 2.52
LIMCH1-211ENST00000509638 YAF2Q8IY57 180 aa30.8■■■□□ 2.52
LIMCH1-211ENST00000509638 ASIC4Q96FT7 647 aa30.8■■■□□ 2.52
LIMCH1-211ENST00000509638 WNT6Q9Y6F9 365 aa30.8■■■□□ 2.52
LIMCH1-211ENST00000509638 RCCD1A6NED2 376 aa30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 KLKB1P03952 638 aa30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 DESP17661 470 aa30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 HARS2P49590 506 aaKnown RBP30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 RAB6CQ53S08 254 aa30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 STRADAQ7RTN6 431 aa30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 RHOT2Q8IXI1 618 aa30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 SLC35G2Q8TBE7 412 aa30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 RNF34Q969K3 372 aa30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 ZFYVE19Q96K21 471 aa30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 BTBD6Q96KE9 485 aa30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 TRMT61BQ9BVS5 477 aaKnown RBP30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 RAB6CQ9H0N0 254 aa30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 THG1LQ9NWX6 298 aaKnown RBP30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 APOEP02649 317 aa30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 Q6ZNB5 142 aa30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 HTR3DQ70Z44 454 aa30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 SND1Q7KZF4 910 aaKnown RBP eCLIP30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 DENND1CQ8IV53 801 aa30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 BBS7Q8IWZ6 715 aa30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 GJD3Q8N144 294 aa30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 SLC44A3Q8N4M1 653 aa30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 CENPIQ92674 756 aaPredicted RBP30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 ZNF830Q96NB3 372 aaPredicted RBP30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 DCLK3Q9C098 648 aa30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 ADGRG1Q9Y653 693 aa30.79■■■□□ 2.52
LIMCH1-211ENST00000509638 TTC28Q96AY4 2481 aa30.78■■■□□ 2.52
LIMCH1-211ENST00000509638 COL4A3Q01955 1670 aa30.78■■■□□ 2.52
LIMCH1-211ENST00000509638 MOCS2O96007 188 aaPredicted RBP30.78■■■□□ 2.52
LIMCH1-211ENST00000509638 F9P00740 461 aa30.78■■■□□ 2.52
LIMCH1-211ENST00000509638 GDI1P31150 447 aa30.78■■■□□ 2.52
LIMCH1-211ENST00000509638 CCR1P32246 355 aa30.78■■■□□ 2.52
LIMCH1-211ENST00000509638 HDAC4P56524 1084 aa30.78■■■□□ 2.52
LIMCH1-211ENST00000509638 FAM131BQ86XD5 332 aa30.78■■■□□ 2.52
LIMCH1-211ENST00000509638 UNC45BQ8IWX7 931 aa30.78■■■□□ 2.52
LIMCH1-211ENST00000509638 OSCP1Q8WVF1 389 aa30.78■■■□□ 2.52
LIMCH1-211ENST00000509638 COL4A2P08572 1712 aa30.77■■■□□ 2.52
LIMCH1-211ENST00000509638 ENDOD1O94919 500 aa30.77■■■□□ 2.52
LIMCH1-211ENST00000509638 CXCR3P49682 368 aa30.77■■■□□ 2.52
LIMCH1-211ENST00000509638 ARHGAP29Q52LW3 1261 aa30.77■■■□□ 2.52
LIMCH1-211ENST00000509638 RNF135Q8IUD6 432 aa30.77■■■□□ 2.52
LIMCH1-211ENST00000509638 KIAA1958Q8N8K9 716 aa30.77■■■□□ 2.52
LIMCH1-211ENST00000509638 CD320Q9NPF0 282 aa30.77■■■□□ 2.52
LIMCH1-211ENST00000509638 SLTMQ9NWH9 1034 aaKnown RBP eCLIP30.77■■■□□ 2.52
LIMCH1-211ENST00000509638 DUS2Q9NX74 493 aaKnown RBP30.77■■■□□ 2.52
LIMCH1-211ENST00000509638 AGO1Q9UL18 857 aaKnown RBP30.77■■■□□ 2.52
LIMCH1-211ENST00000509638 PAXBP1Q9Y5B6 917 aa30.77■■■□□ 2.52
LIMCH1-211ENST00000509638 SLC2A3P11169 496 aa30.76■■■□□ 2.52
LIMCH1-211ENST00000509638 IFNAR2P48551 515 aa30.76■■■□□ 2.52
LIMCH1-211ENST00000509638 TDGQ13569 410 aa30.76■■■□□ 2.52
LIMCH1-211ENST00000509638 PPP2R5DQ14738 602 aa30.76■■■□□ 2.52
LIMCH1-211ENST00000509638 TRIM68Q6AZZ1 485 aa30.76■■■□□ 2.52
LIMCH1-211ENST00000509638 LACRTQ9GZZ8 138 aa30.76■■■□□ 2.52
LIMCH1-211ENST00000509638 IP6K2Q9UHH9 426 aa30.76■■■□□ 2.52
LIMCH1-211ENST00000509638 MYO1FO00160 1098 aa30.75■■■□□ 2.51
LIMCH1-211ENST00000509638 SLC9A3R1O14745 358 aaPredicted RBP30.75■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms