RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 THADAQ6YHU6 1953 aa18.74■□□□□ 0.59
TPM3-220ENST00000509601 TCRBV21S2A2A0A5A6 115 aa18.74■□□□□ 0.59
TPM3-220ENST00000509601 MED19A0JLT2 244 aaPredicted RBP18.74■□□□□ 0.59
TPM3-220ENST00000509601 BCLAF3A2AJT9 711 aaKnown RBP18.74■□□□□ 0.59
TPM3-220ENST00000509601 WASH3PC4AMC7 463 aa18.74■□□□□ 0.59
TPM3-220ENST00000509601 SLC30A4O14863 429 aa18.74■□□□□ 0.59
TPM3-220ENST00000509601 FOXD2O60548 495 aaPredicted RBP18.74■□□□□ 0.59
TPM3-220ENST00000509601 FYNP06241 537 aa18.74■□□□□ 0.59
TPM3-220ENST00000509601 GBP1P32455 592 aa18.74■□□□□ 0.59
TPM3-220ENST00000509601 MPLP40238 635 aa18.74■□□□□ 0.59
TPM3-220ENST00000509601 MFAP3P55082 362 aa18.74■□□□□ 0.59
TPM3-220ENST00000509601 APBA1Q02410 837 aa18.74■□□□□ 0.59
TPM3-220ENST00000509601 ELF2Q15723 593 aa18.74■□□□□ 0.59
TPM3-220ENST00000509601 C11orf74Q86VG3 221 aa18.74■□□□□ 0.59
TPM3-220ENST00000509601 CREBRFQ8IUR6 639 aa18.74■□□□□ 0.59
TPM3-220ENST00000509601 RNF139Q8WU17 664 aa18.74■□□□□ 0.59
TPM3-220ENST00000509601 HMGB4Q8WW32 186 aa18.74■□□□□ 0.59
TPM3-220ENST00000509601 PIWIL1Q96J94 861 aaKnown RBP18.74■□□□□ 0.59
TPM3-220ENST00000509601 GABRG3Q99928 467 aa18.74■□□□□ 0.59
TPM3-220ENST00000509601 ACP6Q9NPH0 428 aa18.74■□□□□ 0.59
TPM3-220ENST00000509601 MBD1Q9UIS9 605 aaPredicted RBP18.74■□□□□ 0.59
TPM3-220ENST00000509601 NCOR2Q9Y618 2525 aa18.73■□□□□ 0.59
TPM3-220ENST00000509601 HOXB2P14652 356 aa18.73■□□□□ 0.59
TPM3-220ENST00000509601 GABRG2P18507 467 aa18.73■□□□□ 0.59
TPM3-220ENST00000509601 GEN1Q17RS7 908 aa18.73■□□□□ 0.59
TPM3-220ENST00000509601 KIAA1211LQ6NV74 962 aa18.73■□□□□ 0.59
TPM3-220ENST00000509601 MSANTD2Q6P1R3 559 aa18.73■□□□□ 0.59
TPM3-220ENST00000509601 DENND1BQ6P3S1 775 aa18.73■□□□□ 0.59
TPM3-220ENST00000509601 CHPFQ8IZ52 775 aa18.73■□□□□ 0.59
TPM3-220ENST00000509601 ZNF606Q8WXB4 792 aa18.73■□□□□ 0.59
TPM3-220ENST00000509601 VPS45Q9NRW7 570 aa18.73■□□□□ 0.59
TPM3-220ENST00000509601 BECN2A8MW95 431 aa18.72■□□□□ 0.59
TPM3-220ENST00000509601 MSI1O43347 362 aaKnown RBP18.72■□□□□ 0.59
TPM3-220ENST00000509601 KRT5P13647 590 aa18.72■□□□□ 0.59
TPM3-220ENST00000509601 HARS2P49590 506 aaKnown RBP18.72■□□□□ 0.59
TPM3-220ENST00000509601 CREB5Q02930 508 aa18.72■□□□□ 0.59
TPM3-220ENST00000509601 TRIM65Q6PJ69 517 aa18.72■□□□□ 0.59
TPM3-220ENST00000509601 CLEC17AQ6ZS10 378 aa18.72■□□□□ 0.59
TPM3-220ENST00000509601 SCUBE3Q8IX30 993 aa18.72■□□□□ 0.59
TPM3-220ENST00000509601 IPO4Q8TEX9 1081 aaKnown RBP18.72■□□□□ 0.59
TPM3-220ENST00000509601 MIS12Q9H081 205 aa18.72■□□□□ 0.59
TPM3-220ENST00000509601 BCCIPQ9P287 314 aaKnown RBP eCLIP18.72■□□□□ 0.59
TPM3-220ENST00000509601 CYTH4Q9UIA0 394 aa18.72■□□□□ 0.59
TPM3-220ENST00000509601 CNOT1A5YKK6 2376 aaKnown RBP18.72■□□□□ 0.59
TPM3-220ENST00000509601 NUP205Q92621 2012 aa18.71■□□□□ 0.59
TPM3-220ENST00000509601 TM4SF5O14894 197 aa18.71■□□□□ 0.59
TPM3-220ENST00000509601 TSPAN3O60637 253 aa18.71■□□□□ 0.59
TPM3-220ENST00000509601 FBXO21O94952 628 aa18.71■□□□□ 0.59
TPM3-220ENST00000509601 CAVIN2O95810 425 aa18.71■□□□□ 0.59
TPM3-220ENST00000509601 LTFP02788 710 aa18.71■□□□□ 0.59
TPM3-220ENST00000509601 PON1P27169 355 aa18.71■□□□□ 0.59
TPM3-220ENST00000509601 TCEAL6Q6IPX3 200 aa18.71■□□□□ 0.59
TPM3-220ENST00000509601 SDE2Q6IQ49 451 aa18.71■□□□□ 0.59
TPM3-220ENST00000509601 DPY19L2P1Q6NXN4 242 aa18.71■□□□□ 0.59
TPM3-220ENST00000509601 GBP6Q6ZN66 633 aa18.71■□□□□ 0.59
TPM3-220ENST00000509601 ENOSF1Q7L5Y1 443 aa18.71■□□□□ 0.59
TPM3-220ENST00000509601 PGBD3Q8N328 593 aa18.71■□□□□ 0.59
TPM3-220ENST00000509601 DDI1Q8WTU0 396 aa18.71■□□□□ 0.59
TPM3-220ENST00000509601 STK32AQ8WU08 396 aa18.71■□□□□ 0.59
TPM3-220ENST00000509601 TCEAL3Q969E4 200 aa18.71■□□□□ 0.59
TPM3-220ENST00000509601 SLC4A5Q9BY07 1137 aa18.71■□□□□ 0.59
TPM3-220ENST00000509601 LMBRD1Q9NUN5 540 aa18.71■□□□□ 0.59
TPM3-220ENST00000509601 CACNA2D2Q9NY47 1150 aa18.71■□□□□ 0.59
TPM3-220ENST00000509601 THAP10Q9P2Z0 257 aaPredicted RBP18.71■□□□□ 0.59
TPM3-220ENST00000509601 RAD54BQ9Y620 910 aa18.71■□□□□ 0.59
TPM3-220ENST00000509601 GTPBP10A4D1E9 387 aaKnown RBP18.7■□□□□ 0.58
TPM3-220ENST00000509601 LETM1O95202 739 aaPredicted RBP18.7■□□□□ 0.58
TPM3-220ENST00000509601 IGLV3-27P01718 113 aa18.7■□□□□ 0.58
TPM3-220ENST00000509601 CYBBP04839 570 aa18.7■□□□□ 0.58
TPM3-220ENST00000509601 LIMK1P53667 647 aa18.7■□□□□ 0.58
TPM3-220ENST00000509601 ENPP2Q13822 863 aa18.7■□□□□ 0.58
TPM3-220ENST00000509601 EXOC3L4Q17RC7 722 aa18.7■□□□□ 0.58
TPM3-220ENST00000509601 DPCR1Q3MIW9 517 aa18.7■□□□□ 0.58
TPM3-220ENST00000509601 AASDHQ4L235 1098 aaPredicted RBP18.7■□□□□ 0.58
TPM3-220ENST00000509601 MPPE1Q53F39 396 aa18.7■□□□□ 0.58
TPM3-220ENST00000509601 ADGRF1Q5T601 910 aa18.7■□□□□ 0.58
TPM3-220ENST00000509601 TMEM215Q68D42 235 aa18.7■□□□□ 0.58
TPM3-220ENST00000509601 TMEM110Q86TL2 294 aa18.7■□□□□ 0.58
TPM3-220ENST00000509601 WDTC1Q8N5D0 677 aa18.7■□□□□ 0.58
TPM3-220ENST00000509601 C12orf50Q8NA57 414 aaPredicted RBP18.7■□□□□ 0.58
TPM3-220ENST00000509601 ERLEC1Q96DZ1 483 aa18.7■□□□□ 0.58
TPM3-220ENST00000509601 TMA16Q96EY4 203 aaKnown RBP18.7■□□□□ 0.58
TPM3-220ENST00000509601 SLC2A11Q9BYW1 496 aa18.7■□□□□ 0.58
TPM3-220ENST00000509601 SIX2Q9NPC8 291 aa18.7■□□□□ 0.58
TPM3-220ENST00000509601 ELOVL2Q9NXB9 296 aa18.7■□□□□ 0.58
TPM3-220ENST00000509601 STON1Q9Y6Q2 735 aa18.7■□□□□ 0.58
TPM3-220ENST00000509601 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa18.69■□□□□ 0.58
TPM3-220ENST00000509601 GOLGA6L7A0A1B0GV03 622 aa18.69■□□□□ 0.58
TPM3-220ENST00000509601 LATS1O95835 1130 aa18.69■□□□□ 0.58
TPM3-220ENST00000509601 NDUFV2P19404 249 aa18.69■□□□□ 0.58
TPM3-220ENST00000509601 HOXD9P28356 352 aaPredicted RBP18.69■□□□□ 0.58
TPM3-220ENST00000509601 MTIF2P46199 727 aaKnown RBP18.69■□□□□ 0.58
TPM3-220ENST00000509601 DHPSP49366 369 aaPredicted RBP18.69■□□□□ 0.58
TPM3-220ENST00000509601 BYSLQ13895 437 aaKnown RBP18.69■□□□□ 0.58
TPM3-220ENST00000509601 MEA1Q16626 185 aa18.69■□□□□ 0.58
TPM3-220ENST00000509601 ARHGAP44Q17R89 818 aa18.69■□□□□ 0.58
TPM3-220ENST00000509601 TMEFF1Q8IYR6 380 aa18.69■□□□□ 0.58
TPM3-220ENST00000509601 SHC3Q92529 594 aa18.69■□□□□ 0.58
TPM3-220ENST00000509601 AZIN2Q96A70 460 aa18.69■□□□□ 0.58
TPM3-220ENST00000509601 FAM81BQ96LP2 452 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms