RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 PNMA8BQ9ULN7 279 aaPredicted RBP3.39□□□□□ -1.87
NUP54-208ENST00000508604 DPPA5A6NC42 116 aa3.39□□□□□ -1.87
NUP54-208ENST00000508604 TRIM43BA6NCK2 446 aa3.39□□□□□ -1.87
NUP54-208ENST00000508604 TBX3O15119 743 aa3.39□□□□□ -1.87
NUP54-208ENST00000508604 NTSR1P30989 418 aa3.39□□□□□ -1.87
NUP54-208ENST00000508604 NEK2P51955 445 aa3.39□□□□□ -1.87
NUP54-208ENST00000508604 DNASE1L3Q13609 305 aa3.39□□□□□ -1.87
NUP54-208ENST00000508604 SMTNL2Q2TAL5 461 aa3.39□□□□□ -1.87
NUP54-208ENST00000508604 GLE1Q53GS7 698 aaKnown RBP3.39□□□□□ -1.87
NUP54-208ENST00000508604 FBXL22Q6P050 247 aa3.39□□□□□ -1.87
NUP54-208ENST00000508604 TRIM43Q96BQ3 446 aaPredicted RBP3.39□□□□□ -1.87
NUP54-208ENST00000508604 SEZ6LQ9BYH1 1024 aa3.39□□□□□ -1.87
NUP54-208ENST00000508604 C6orf106Q9H6K1 298 aaPredicted RBP3.39□□□□□ -1.87
NUP54-208ENST00000508604 TASP1Q9H6P5 420 aa3.39□□□□□ -1.87
NUP54-208ENST00000508604 ASNSD1Q9NWL6 643 aa3.39□□□□□ -1.87
NUP54-208ENST00000508604 MYO6Q9UM54 1294 aa3.39□□□□□ -1.87
NUP54-208ENST00000508604 VPS4AQ9UN37 437 aa3.39□□□□□ -1.87
NUP54-208ENST00000508604 SBNO2Q9Y2G9 1366 aa3.38□□□□□ -1.87
NUP54-208ENST00000508604 KIR2DS5A0A0G2JLQ3 304 aa3.38□□□□□ -1.87
NUP54-208ENST00000508604 FAM227AF5H4B4 570 aa3.38□□□□□ -1.87
NUP54-208ENST00000508604 KIR2DS3K7RE56 304 aa3.38□□□□□ -1.87
NUP54-208ENST00000508604 GRID2O43424 1007 aa3.38□□□□□ -1.87
NUP54-208ENST00000508604 ACAA1P09110 424 aaPredicted RBP3.38□□□□□ -1.87
NUP54-208ENST00000508604 YY1P25490 414 aa3.38□□□□□ -1.87
NUP54-208ENST00000508604 AGFG1P52594 562 aaKnown RBP3.38□□□□□ -1.87
NUP54-208ENST00000508604 GAD2Q05329 585 aa3.38□□□□□ -1.87
NUP54-208ENST00000508604 SLC4A8Q2Y0W8 1093 aa3.38□□□□□ -1.87
NUP54-208ENST00000508604 C6orf10Q5SRN2 563 aa3.38□□□□□ -1.87
NUP54-208ENST00000508604 NUGGCQ68CJ6 796 aa3.38□□□□□ -1.87
NUP54-208ENST00000508604 MAEAQ7L5Y9 396 aa3.38□□□□□ -1.87
NUP54-208ENST00000508604 PPP1R35Q8TAP8 253 aa3.38□□□□□ -1.87
NUP54-208ENST00000508604 NMD3Q96D46 503 aaKnown RBP3.38□□□□□ -1.87
NUP54-208ENST00000508604 ZDHHC12Q96GR4 267 aa3.38□□□□□ -1.87
NUP54-208ENST00000508604 ACO2Q99798 780 aaKnown RBP3.38□□□□□ -1.87
NUP54-208ENST00000508604 PIMREGQ9BSJ6 248 aa3.38□□□□□ -1.87
NUP54-208ENST00000508604 TM6SF1Q9BZW5 370 aa3.38□□□□□ -1.87
NUP54-208ENST00000508604 TRIM2Q9C040 744 aa3.38□□□□□ -1.87
NUP54-208ENST00000508604 PLSCR4Q9NRQ2 329 aa3.38□□□□□ -1.87
NUP54-208ENST00000508604 AFF4Q9UHB7 1163 aaKnown RBP3.38□□□□□ -1.87
NUP54-208ENST00000508604 EVPLQ92817 2033 aa3.37□□□□□ -1.87
NUP54-208ENST00000508604 CAPN8A6NHC0 703 aa3.37□□□□□ -1.87
NUP54-208ENST00000508604 ISM1B1AKI9 464 aa3.37□□□□□ -1.87
NUP54-208ENST00000508604 ATG13O75143 517 aa3.37□□□□□ -1.87
NUP54-208ENST00000508604 WDR47O94967 919 aa3.37□□□□□ -1.87
NUP54-208ENST00000508604 HOXC6P09630 235 aa3.37□□□□□ -1.87
NUP54-208ENST00000508604 DUSP1P28562 367 aa3.37□□□□□ -1.87
NUP54-208ENST00000508604 HOXA11P31270 313 aaPredicted RBP3.37□□□□□ -1.87
NUP54-208ENST00000508604 RAE1P78406 368 aaKnown RBP3.37□□□□□ -1.87
NUP54-208ENST00000508604 IZUMO4Q1ZYL8 232 aa3.37□□□□□ -1.87
NUP54-208ENST00000508604 ISM2Q6H9L7 571 aa3.37□□□□□ -1.87
NUP54-208ENST00000508604 B3GNT9Q6UX72 402 aa3.37□□□□□ -1.87
NUP54-208ENST00000508604 NPNTQ6UXI9 565 aa3.37□□□□□ -1.87
NUP54-208ENST00000508604 SRGAP1Q7Z6B7 1085 aa3.37□□□□□ -1.87
NUP54-208ENST00000508604 ZNF329Q86UD4 541 aa3.37□□□□□ -1.87
NUP54-208ENST00000508604 TMEM174Q8WUU8 243 aa3.37□□□□□ -1.87
NUP54-208ENST00000508604 CELF1Q92879 486 aaKnown RBP3.37□□□□□ -1.87
NUP54-208ENST00000508604 HOOK2Q96ED9 719 aa3.37□□□□□ -1.87
NUP54-208ENST00000508604 LRGUKQ96M69 825 aa3.37□□□□□ -1.87
NUP54-208ENST00000508604 AIFM3Q96NN9 605 aa3.37□□□□□ -1.87
NUP54-208ENST00000508604 CDT1Q9H211 546 aa3.37□□□□□ -1.87
NUP54-208ENST00000508604 ABHD10Q9NUJ1 306 aa3.37□□□□□ -1.87
NUP54-208ENST00000508604 CPNE7Q9UBL6 633 aa3.37□□□□□ -1.87
NUP54-208ENST00000508604 MID2Q9UJV3 735 aa3.37□□□□□ -1.87
NUP54-208ENST00000508604 ITGB1BP2Q9UKP3 347 aa3.37□□□□□ -1.87
NUP54-208ENST00000508604 A0A0G2JK05 382 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 C16orf96A6NNT2 1141 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 LDB3O75112 727 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 ZNF432O94892 652 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 MAP4K4O95819 1239 aaPredicted RBP3.36□□□□□ -1.87
NUP54-208ENST00000508604 TXNP10599 105 aaKnown RBP3.36□□□□□ -1.87
NUP54-208ENST00000508604 HOXD12P35452 270 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 IDUAP35475 653 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 COPAP53621 1224 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 DSCR9P59020 149 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 BRDTQ58F21 947 aaPredicted RBP3.36□□□□□ -1.87
NUP54-208ENST00000508604 PIK3CD-AS1Q5SR53 167 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 GRHL2Q6ISB3 625 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 TMPRSS12Q86WS5 348 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 TMEM255BQ8WV15 326 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 AKAP1Q92667 903 aaKnown RBP eCLIP3.36□□□□□ -1.87
NUP54-208ENST00000508604 PMM1Q92871 262 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 MSI2Q96DH6 328 aaKnown RBP3.36□□□□□ -1.87
NUP54-208ENST00000508604 WDR83Q9BRX9 315 aaKnown RBP3.36□□□□□ -1.87
NUP54-208ENST00000508604 SAP30LQ9HAJ7 183 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 ATP6V0A4Q9HBG4 840 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 DKK4Q9UBT3 224 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 TPCN1Q9ULQ1 816 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 PCDHGB1Q9Y5G3 927 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 EMSYQ7Z589 1322 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 COL15A1P39059 1388 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 CFAP69A5D8W1 941 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 MBPP02686 304 aaPredicted RBP3.36□□□□□ -1.87
NUP54-208ENST00000508604 ENO1P06733 434 aaKnown RBP3.36□□□□□ -1.87
NUP54-208ENST00000508604 CHRNB1P11230 501 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 AKR1A1P14550 325 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 MATN1P21941 496 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 CIITAP33076 1130 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 RFX2P48378 723 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 LIPMQ5VYY2 423 aa3.36□□□□□ -1.87
NUP54-208ENST00000508604 ATG9BQ674R7 924 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms